Independent Researcher,108815, Moscow, Russia.
Department of Biochemistry, I.M. Sechenov First Moscow State Medical University (Sechenov University), 119991, Moscow, Russia.
Prog Biophys Mol Biol. 2024 Nov;193:19-34. doi: 10.1016/j.pbiomolbio.2024.09.003. Epub 2024 Sep 6.
Superfamily of cytochromes P450 (CYPs) is composed of heme-thiolate-containing monooxygenase enzymes, which play crucial roles in the biosynthesis, bioactivation, and detoxification of a variety of organic compounds, both endogenic and exogenic. Majority of CYP monooxygenase systems are multi-component and contain various redox partners, cofactors and auxiliary proteins, which contribute to their diversity in both prokaryotes and eukaryotes. Recent progress in bioinformatics and computational biology approaches make it possible to undertake whole-genome and phylogenetic analyses of CYPomes of a variety of organisms. Considerable variations in sequences within and between CYP families and high similarity in secondary and tertiary structures between all CYPs along with dramatic conformational changes in secondary structure elements of a substrate binding site during catalysis have been reported. This provides structural plasticity and substrate promiscuity, which underlie functional diversity of CYPs. Gene duplication and mutation events underlie CYP evolutionary diversity and emergence of novel selectable functions, which provide the involvement of CYPs in high adaptability to changing environmental conditions and dietary restrictions. In our review, we discuss the recent advancements and challenges in the elucidating the evolutionary origin and mechanisms underlying the CYP monooxygenase system diversity and plasticity. Our review is in the view of hypothesis that diversity of CYP monooxygenase systems is translated into the broad metabolic profiles, and this has been acquired during the long evolutionary time to provide structural plasticity leading to high adaptative capabilities to environmental stress conditions.
细胞色素 P450(CYPs)超家族由含有血红素硫醇的单加氧酶组成,在多种有机化合物的生物合成、生物激活和解毒中发挥着关键作用,这些化合物既有内源性的也有外源性的。大多数 CYP 单加氧酶系统是多组分的,包含各种氧化还原伴侣、辅助因子和辅助蛋白,这使得它们在原核生物和真核生物中的多样性有所不同。生物信息学和计算生物学方法的最新进展使得对各种生物体的 CYP 组进行全基因组和系统发育分析成为可能。已经报道了 CYP 家族内和家族间序列的显著差异以及所有 CYP 之间二级和三级结构的高度相似性,以及在催化过程中底物结合位点的二级结构元件的剧烈构象变化。这提供了结构可塑性和底物的混杂性,这是 CYP 功能多样性的基础。基因复制和突变事件是 CYP 进化多样性和新的可选择功能出现的基础,这使得 CYP 能够很好地适应环境变化和饮食限制。在我们的综述中,我们讨论了阐明 CYP 单加氧酶系统多样性和可塑性的进化起源和机制的最新进展和挑战。我们的综述观点是,CYP 单加氧酶系统的多样性转化为广泛的代谢谱,这是在漫长的进化过程中获得的,提供了结构的可塑性,从而具有很高的环境应激适应能力。