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基于遗传算法多元线性回归和机器学习的甾醇生物合成抑制剂类杀菌剂急性毒性定量构效关系建模

Genetic algorithm multiple linear regression and machine learning-driven QSTR modeling for the acute toxicity of sterol biosynthesis inhibitor fungicides.

作者信息

Abbod Mohsen, Safaie Naser, Gholivand Khodayar

机构信息

Department of Plant Protection, Faculty of Agriculture, Al-Baath University, Homs, Syria.

Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, P.O.B. 14115-336, Tehran, Iran.

出版信息

Heliyon. 2024 Aug 15;10(16):e36373. doi: 10.1016/j.heliyon.2024.e36373. eCollection 2024 Aug 30.

DOI:10.1016/j.heliyon.2024.e36373
PMID:39247303
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11378891/
Abstract

Sterol Biosynthesis Inhibitors (SBIs) are a major class of fungicides used globally. Their widespread application in agriculture raises concerns about potential harm and toxicity to non-target organisms, including humans. To address these concerns, a quantitative structure-toxicity relationship (QSTR) modeling approach has been developed to assess the acute toxicity of 45 different SBIs. The genetic algorithm (GA) was used to identify key molecular descriptors influencing toxicity. These descriptors were then used to build robust QSTR models using multiple linear regression (MLR), support vector regression (SVR), and artificial neural network (ANN) algorithms. The Cross-validation, Y-randomization test, applicability domain methods, and external validation were carried out to evaluate the accuracy and validity of the generated models. The MLR model exhibited satisfactory predictive performance, with an R of 0.72. The SVR and ANN models obtained R values of 0.7 and 0.8, respectively. ANN model demonstrated superior performance compared to other models, achieving R and R values of 0.74 and 0.7, respectively. The models passed both internal and external validation, indicating their robustness. These models offer a valuable tool for risk assessment, enabling the evaluation of potential hazards associated with future applications of SBIs.

摘要

甾醇生物合成抑制剂(SBIs)是全球范围内使用的一类主要杀菌剂。它们在农业中的广泛应用引发了人们对其对包括人类在内的非靶标生物的潜在危害和毒性的担忧。为了解决这些担忧,已开发出一种定量结构-毒性关系(QSTR)建模方法,以评估45种不同SBIs的急性毒性。遗传算法(GA)用于识别影响毒性的关键分子描述符。然后,使用这些描述符通过多元线性回归(MLR)、支持向量回归(SVR)和人工神经网络(ANN)算法构建稳健的QSTR模型。进行了交叉验证、Y随机化检验、适用域方法和外部验证,以评估所生成模型的准确性和有效性。MLR模型表现出令人满意的预测性能,R值为0.72。SVR和ANN模型的R值分别为0.7和0.8。与其他模型相比,ANN模型表现出卓越的性能,R和R值分别为0.74和0.7。这些模型通过了内部和外部验证,表明了它们的稳健性。这些模型为风险评估提供了一个有价值的工具,能够评估与SBIs未来应用相关的潜在危害。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/249a70bc1dad/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/a02f1d06ac00/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/7466028fa66f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/59e9affe1bbf/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/249a70bc1dad/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/a02f1d06ac00/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/7466028fa66f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/59e9affe1bbf/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6486/11378891/249a70bc1dad/gr4.jpg

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