Dowaidar Moataz
Bioengineering Department, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran 31261, Saudi Arabia; Interdisciplinary Research Center for Hydrogen Technologies and Carbon Management, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, 31261, Saudi Arabia; Biosystems and Machines Research Center, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, 31261, Saudi Arabia.
Bioorg Chem. 2024 Dec;153:107774. doi: 10.1016/j.bioorg.2024.107774. Epub 2024 Sep 6.
In most organisms, the tri-carboxylic acid cycle (TCA cycle) is an essential metabolic system that is involved in both energy generation and carbon metabolism. Its uni-directionality, however, restricts its use in synthetic biology and carbon fixation. Here, it is describing the use of the modified TCA cycle, called the Tri-carboxylic acid Hooked to Ethylene by Enzyme Reactions and Amino acid Synthesis, the reductive tricarboxylic acid branch/4-hydroxybutyryl-CoA/ethylmalonyl-CoA/acetyl-CoA (THETA) cycle, in Escherichia coli for the purposes of carbon fixation and amino acid synthesis. Three modules make up the THETA cycle: (1) pyruvate to succinate transformation, (2) succinate to crotonyl-CoA change, and (3) crotonyl-CoA to acetyl-CoA and pyruvate change. It is presenting each module's viability in vivo and showing how it integrates into the E. coli metabolic network to support growth on minimal medium without the need for outside supplementation. Enzyme optimization, route redesign, and heterologous expression were used to get over metabolic roadblocks and produce functional modules. Furthermore, the THETA cycle may be improved by including components of the Carbon-Efficient Tri-Carboxylic Acid Cycle (CETCH cycle) to improve carbon fixation. THETA cycle's promise as a platform for applications in synthetic biology and carbon fixation.
在大多数生物体中,三羧酸循环(TCA循环)是一个至关重要的代谢系统,参与能量生成和碳代谢。然而,其单向性限制了它在合成生物学和碳固定中的应用。在此,本文描述了一种经过修饰的TCA循环,即通过酶反应和氨基酸合成与乙烯相连的三羧酸循环、还原性三羧酸分支/4-羟基丁酰辅酶A/乙基丙二酰辅酶A/乙酰辅酶A(THETA)循环,在大肠杆菌中用于碳固定和氨基酸合成的情况。THETA循环由三个模块组成:(1)丙酮酸向琥珀酸的转化,(2)琥珀酸向巴豆酰辅酶A的转变,以及(3)巴豆酰辅酶A向乙酰辅酶A和丙酮酸的转变。本文展示了每个模块在体内的可行性,并说明了它如何整合到大肠杆菌代谢网络中,以支持在无需外部补充的基本培养基上生长。通过酶优化、途径重新设计和异源表达来克服代谢障碍并产生功能模块。此外,通过纳入碳高效三羧酸循环(CETCH循环)的组件来改善碳固定,可对THETA循环进行改进。THETA循环作为合成生物学和碳固定应用平台的前景。