Suppr超能文献

基于结构的模拟研究揭示尿苷二磷酸糖基转移酶 71c5 的过硫化作用有助于脱落酸的可逆失活。

Insights from Structure-Based Simulations into the Persulfidation of Uridine Diphosphate-Glycosyltransferase71c5 Facilitating the Reversible Inactivation of Abscisic Acid.

机构信息

College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.

Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences (IBFC, CAAS), Changsha 410221, China.

出版信息

Int J Mol Sci. 2024 Sep 6;25(17):9679. doi: 10.3390/ijms25179679.

Abstract

The action of abscisic acid (ABA) is closely related to its level in plant tissues. Uridine diphosphate-glycosyltransferase71c5 (UGT71C5) was characterized as a major UGT enzyme to catalyze the formation of the ABA-glucose ester (ABA-GE), a reversible inactive form of free ABA in (thale cress). UGTs function in a mode where the catalytic base deprotonates an acceptor to allow a nucleophilic attack at the anomeric center of the donor, achieving the transfer of a glucose moiety. The proteomic data revealed that UGT71C5 can be persulfidated. Herein, an experimental method was employed to detect the persulfidation site of UGT71C5, and the computational methods were further used to identify the yet unknown molecular basis of ABA glycosylation as well as the regulatory role of persulfidation in this process. Our results suggest that the linker and the U-shaped loop are regulatory structural elements: the linker is associated with the binding of uridine diphosphate glucose (UPG) and the U-shaped loop is involved in binding both UPG and ABA.It was also found that it is through tuning the dynamics of the U-shaped loop that is accompanied by the movement of tyrosine (Y388) that the persulfidation of cysteine (C311) leads to the catalytic residue histidine (H16) being in place, preparing for the deprotonation of ABA, and then reorientates UPG and deprotonated ABA closer to the 'Michaelis' complex, facilitating the transfer of a glucose moiety. Ultimately, the persulfidation of UGT71C5 is in favor of ABA glycosylation. Our results provide insights into the molecular details of UGT71C5 recognizing substrates and insights concerning persulfidation as a possible mechanism for hydrogen sulfide (HS) to modulate the content of ABA, which helps us understand how modulating ABA level strengthens plant tolerance.

摘要

脱落酸 (ABA) 的作用与其在植物组织中的水平密切相关。尿苷二磷酸-糖基转移酶 71c5 (UGT71C5) 被鉴定为主要的 UGT 酶,可催化 ABA-葡萄糖酯 (ABA-GE) 的形成,ABA-GE 是拟南芥中游离 ABA 的可逆非活性形式。UGT 以一种模式发挥作用,其中催化碱将受体去质子化,允许亲核攻击供体的端基碳原子,从而实现葡萄糖部分的转移。蛋白质组学数据显示 UGT71C5 可以被过硫化。在此,采用实验方法检测 UGT71C5 的过硫化位点,进一步采用计算方法鉴定 ABA 糖基化的未知分子基础以及过硫化在该过程中的调节作用。我们的结果表明,连接子和 U 形环是调节结构元件:连接子与尿苷二磷酸葡萄糖 (UPG) 的结合有关,U 形环参与 UPG 和 ABA 的结合。还发现,正是通过调节 U 形环的动力学,伴随着酪氨酸 (Y388) 的运动,半胱氨酸 (C311) 的过硫化导致催化残基组氨酸 (H16) 就位,为 ABA 的去质子化做准备,然后重新定向 UPG 和去质子化的 ABA 更接近“米氏”复合物,促进葡萄糖部分的转移。最终,UGT71C5 的过硫化有利于 ABA 的糖基化。我们的结果提供了 UGT71C5 识别底物的分子细节的见解,并提供了过硫化作为硫化氢 (HS) 调节 ABA 含量的可能机制的见解,这有助于我们理解如何调节 ABA 水平增强植物的耐受性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b7e/11395816/ff68fab1e249/ijms-25-09679-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验