从健康供体粪便中分离出的非致病性5C LMG S-33222的基因组序列草图。
Draft genome sequence of non-pathogenic 5C LMG S-33222, isolated from healthy donor feces.
作者信息
Di Pierro Francesco, Zerbinati Nicola, Guasti Luigina, Cazzaniga Massimiliano, Bertuccioli Alexander, Palazzi Chiara Maria, Labrini Edoardo, Sagheddu Valeria, Soldi Sara
机构信息
Microbiota International Clinical Society, Torino, Italy.
Scientific & Research Department, Velleja Research, Milano, Italy.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0058024. doi: 10.1128/mra.00580-24. Epub 2024 Sep 16.
Abstract
We present the genome sequence of 5C LMG S-33222, a non-pathogenic microorganism with potential probiotic features. The strain was isolated in 2021 from a fecal sample of a healthy Italian infant. The total genome size is 4,712,575 bp with a G + C content of 51%.
摘要
我们展示了5C LMG S-33222的基因组序列，这是一种具有潜在益生菌特性的非致病性微生物。该菌株于2021年从一名健康意大利婴儿的粪便样本中分离出来。基因组总大小为4,712,575碱基对，G + C含量为51%。
相似文献
1
Draft genome sequence of non-pathogenic 5C LMG S-33222, isolated from healthy donor feces.从健康供体粪便中分离出的非致病性5C LMG S-33222的基因组序列草图。
Microbiol Resour Announc. 2024 Oct 10;13(10):e0058024. doi: 10.1128/mra.00580-24. Epub 2024 Sep 16.
2
Draft genome sequence of a triple hybrid strain isolated from a healthy donor feces.从健康供体粪便中分离出的三杂交菌株的基因组序列草图。
Microbiol Resour Announc. 2024 Mar 26;13(5):e0011324. doi: 10.1128/mra.00113-24.
3
Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738.非产志贺毒素大肠杆菌O157 NCCP15738的基因组序列草图
Gut Pathog. 2016 Apr 19;8:13. doi: 10.1186/s13099-016-0096-2. eCollection 2016.
4
A Toxic Friend: Genotoxic and Mutagenic Activity of the Probiotic Strain Escherichia coli Nissle 1917.毒性朋友：益生菌菌株大肠杆菌 Nissle 1917 的遗传毒性和致突变活性。
mSphere. 2021 Aug 25;6(4):e0062421. doi: 10.1128/mSphere.00624-21. Epub 2021 Aug 11.
5
Draft Genome Sequence of the Necrotrophic Plant-Pathogenic Bacterium Pectobacterium carotovorum subsp. carotovorum Strain LMG 2410.坏死型植物致病细菌胡萝卜软腐果胶杆菌胡萝卜软腐亚种菌株LMG 2410的基因组序列草图
Microbiol Resour Announc. 2019 Aug 1;8(31):e00614-19. doi: 10.1128/MRA.00614-19.
6
Draft Genome Sequence of the Commensal Escherichia coli Strain F-18.共生大肠杆菌F-18菌株的基因组序列草图
Genome Announc. 2016 Dec 22;4(6):e01416-16. doi: 10.1128/genomeA.01416-16.
7
Pathogenicity of enterohemorrhagic Escherichia coli in neonatal calves and evaluation of fecal shedding by treatment with probiotic Escherichia coli.肠出血性大肠杆菌对新生犊牛的致病性及用益生菌大肠杆菌治疗后粪便排菌情况的评估
J Food Prot. 2003 Jun;66(6):924-30. doi: 10.4315/0362-028x-66.6.924.
8
Draft Genome Sequence of Escherichia coli ARS-CC7049, a Sequence Type 38 Strain Isolated from Dry Cow Feces on a Commercial Dairy Operation.大肠杆菌ARS-CC7049的基因组序列草图，该菌株为从商业奶牛场干牛粪中分离出的38型菌株。
Microbiol Resour Announc. 2022 Feb 17;11(2):e0094321. doi: 10.1128/mra.00943-21. Epub 2022 Feb 10.
9
Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4.双歧双歧杆菌 BGN4 益生菌完整基因组序列。
J Bacteriol. 2012 Sep;194(17):4757-8. doi: 10.1128/JB.00988-12.
10
Genome Sequence of an Enterobacter helveticus Strain, 1159/04 (LMG 23733), Isolated from Fruit Powder.从果粉中分离出的瑞士肠杆菌菌株1159/04（LMG 23733）的基因组序列
Genome Announc. 2013 Dec 12;1(6):e01038-13. doi: 10.1128/genomeA.01038-13.
引用本文的文献
1
Selection, Comparative Genomics, and Potential Probiotic Features of Escherichia coli 5C, a pks-Negative Strain Isolated from Healthy Infant Donor Feces.从健康婴儿供体粪便中分离出的pks阴性菌株大肠杆菌5C的筛选、比较基因组学及潜在益生菌特性
Probiotics Antimicrob Proteins. 2025 Apr 16. doi: 10.1007/s12602-025-10522-5.
本文引用的文献
1
High colonisation by probiotic Escherichia coli A0 34/86 strain is associated with a less diverse microbiome related to children's age.益生菌大肠杆菌 A034/86 菌株的高定植与与儿童年龄相关的微生物组多样性降低有关。
Benef Microbes. 2024 Jan 23;15(1):5-17. doi: 10.1163/18762891-20220049.
2
Erratum for Humphries et al., "CLSI Methods Development and Standardization Working Group Best Practices for Evaluation of Antimicrobial Susceptibility Tests".汉弗莱斯等人的《临床和实验室标准协会方法开发与标准化工作组评估抗菌药物敏感性试验的最佳实践》勘误
J Clin Microbiol. 2023 Oct 24;61(10):e0073923. doi: 10.1128/jcm.00739-23. Epub 2023 Sep 21.
3
Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores.柏拉图：利用基于蛋白质序列的复制子分布分数，在短读长草图组装中鉴定和描述细菌质粒片段。
Microb Genom. 2020 Oct;6(10). doi: 10.1099/mgen.0.000398.
4
Microbiome Composition in Pediatric Populations from Birth to Adolescence: Impact of Diet and Prebiotic and Probiotic Interventions.儿科人群从出生到青春期的微生物组组成：饮食以及益生元和益生菌干预的影响。
Dig Dis Sci. 2020 Mar;65(3):706-722. doi: 10.1007/s10620-020-06092-x.
5
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
6
Administration of the Probiotic Escherichia coli Strain A0 34/86 Resulted in a Stable Colonization of the Human Intestine During the First Year of Life.益生菌大肠杆菌 A034/86 的应用可导致其在生命的第一年稳定定植于人体肠道。
Probiotics Antimicrob Proteins. 2020 Jun;12(2):343-350. doi: 10.1007/s12602-019-09548-3.
7
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
8
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.Qualimap 2：用于高通量测序数据的高级多样本质量控制
Bioinformatics. 2016 Jan 15;32(2):292-4. doi: 10.1093/bioinformatics/btv566. Epub 2015 Oct 1.
9
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
10
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
Zotero 插件