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Harnessing sample preparation for RNA-sequencing toward a reliable bioinformatics analysis.

作者信息

Talia Marianna, Cesario Eugenio, Cirillo Francesca, Scordamaglia Domenica, Di Dio Marika, Zicarelli Azzurra, Mondino Adelina Assunta, Occhiuzzi Maria Antonietta, De Francesco Ernestina Marianna, Belfiore Antonino, Miglietta Anna Maria, Di Dio Michele, Capalbo Carlo, Maggiolini Marcello, Lappano Rosamaria

机构信息

Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, 87036, Rende, Italy.

Department of Cultures, Education and Society, University of Calabria, 87036, Rende, Italy.

出版信息

J Transl Med. 2024 Sep 16;22(1):846. doi: 10.1186/s12967-024-05585-x.

DOI:10.1186/s12967-024-05585-x
PMID:39285433
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11406772/
Abstract
摘要

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本文引用的文献

1
Letter: Sample preparation before sequencing and bioinformatics analysis method selection are more important than the results.信函:测序前的样本制备和生物信息学分析方法的选择比结果更重要。
J Transl Med. 2024 Jul 29;22(1):699. doi: 10.1186/s12967-024-05510-2.
2
Cancer-associated fibroblasts (CAFs) gene signatures predict outcomes in breast and prostate tumor patients.癌症相关成纤维细胞(CAFs)基因特征可预测乳腺癌和前列腺癌患者的预后。
J Transl Med. 2024 Jun 27;22(1):597. doi: 10.1186/s12967-024-05413-2.
3
Cancer-specific functional profiling in microsatellite-unstable (MSI) colon and endometrial cancers using combined differentially expressed genes and biclustering analysis.使用联合差异表达基因和双聚类分析对微卫星不稳定(MSI)结肠癌和子宫内膜癌进行癌症特异性功能分析。
Medicine (Baltimore). 2023 May 12;102(19):e33647. doi: 10.1097/MD.0000000000033647.
4
A survey of best practices for RNA-seq data analysis.RNA测序数据分析的最佳实践调查。
Genome Biol. 2016 Jan 26;17:13. doi: 10.1186/s13059-016-0881-8.
5
Breast and prostate cancer: more similar than different.乳腺癌和前列腺癌:更多的相似之处而非不同。
Nat Rev Cancer. 2010 Mar;10(3):205-12. doi: 10.1038/nrc2795. Epub 2010 Feb 11.