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髋关节痛和前列腺癌患者中共享基因 MXD3 特征的鉴定及生物学机制。

Identification of the shared gene MXD3 signatures and biological mechanism in patients with hip pain and prostate cancer.

机构信息

Department of Urology, The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Hunan Cancer Hospital, Changsha, Hunan, China.

Department of Urology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.

出版信息

Medicine (Baltimore). 2024 Sep 13;103(37):e39592. doi: 10.1097/MD.0000000000039592.

Abstract

Prostate cancer (PRAD) is recognized as having a significant effect on systemic illnesses. This study examined possible immune cells, metabolic pathways, and genes that may explain the interaction between PRAD and hip pain. We used information retrieved from the Cancer Genome Atlas and the Gene Expression Omnibus databases. To find common genes, we utilized differential expression analysis and weighted gene co-expression network analysis. The genes that were shared were subjected to pathway enrichment studies using Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes. Additionally, hub genes were analyzed using LASSO regression, and a receiver operating characteristic curve was generated based on the screening outcomes. The genes for the nodes were chosen in a protein-protein interaction network that was built. Single-sample gene-set enrichment analysis was performed to identify the differentially expressed genes. Immunohistochemistry staining confirmed hub gene expression, and single-sample gene-set enrichment analysis assessed immune cell infiltration. We concluded by comparing MAX dimerization protein 3 (MXD3) and MAX interactor 1 (MXI1) expression in tumor tissues using Uniform Manifold Approximation and Projection and violin plots in the Tumor lmmune Single-cell Hub database. After analyzing the intersection of the differentially expressed genes and weighted gene co-expression network analysis-significant module genes, we determined that MXD3 was the best shared diagnostic biomarker for PRAD and hip pain. One potential predictor of PRAD development was the MXI1 node gene, which was found in the protein-protein interaction network. The analyses revealed that MXD3 had a relatively positive correlation with neutrophil and T-helper cell infiltration levels, whereas MXI1 had a negative correlation with mast and Tgd cell levels. Tumors had lower levels of MXI1 expression and higher levels of MXD3 expression compared to normal tissues. Endothelial cells, induced pluripotent stem cells, and smooth muscle cells were all found to express MXI1. This is the first study to investigate the close genetic link between hip pain and PRAD using bioinformatics technologies. The 2 most significant genes involved in crosstalk between PRAD and hip pain were MXD3 and MXI1. The immunological responses triggered by T cells, mast cells, and neutrophils may be crucial in the relationship between PRAD and hip pain.

摘要

前列腺癌(PRAD)被认为对系统性疾病有重大影响。本研究探讨了可能的免疫细胞、代谢途径和基因,以解释 PRAD 与髋痛之间的相互作用。我们使用从癌症基因组图谱和基因表达综合数据库中检索到的信息。为了找到共同的基因,我们利用差异表达分析和加权基因共表达网络分析。使用基因本体论和京都基因与基因组百科全书对共享的基因进行途径富集研究。此外,使用 LASSO 回归分析枢纽基因,并根据筛选结果生成接收者操作特征曲线。在构建的蛋白质-蛋白质相互作用网络中选择节点基因。进行单样本基因集富集分析以鉴定差异表达基因。免疫组织化学染色证实了枢纽基因的表达,并进行了单样本基因集富集分析以评估免疫细胞浸润。我们通过在肿瘤免疫单细胞中心数据库中使用 Uniform Manifold Approximation and Projection 和小提琴图比较肿瘤组织中 MAX 二聚化蛋白 3 (MXD3) 和 MAX 相互作用蛋白 1 (MXI1) 的表达,得出结论。在分析差异表达基因和加权基因共表达网络分析显着模块基因的交集后,我们确定 MXD3 是 PRAD 和髋痛的最佳共享诊断生物标志物。在蛋白质-蛋白质相互作用网络中发现了一个潜在的 PRAD 发生预测因子,即 MXI1 节点基因。分析表明,MXD3 与中性粒细胞和辅助性 T 细胞浸润水平呈正相关,而 MXI1 与肥大细胞和 Tgd 细胞水平呈负相关。与正常组织相比,肿瘤组织中 MXI1 的表达水平较低,而 MXD3 的表达水平较高。内皮细胞、诱导多能干细胞和平滑肌细胞均表达 MXI1。这是首次使用生物信息学技术研究髋痛与 PRAD 之间的密切遗传联系。涉及 PRAD 和髋痛之间串扰的 2 个最重要基因是 MXD3 和 MXI1。T 细胞、肥大细胞和中性粒细胞引发的免疫反应可能在 PRAD 与髋痛之间的关系中至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c07/11404923/2cd41ce2c429/medi-103-e39592-g001.jpg

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