Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, United States.
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, United States.
Methods Enzymol. 2024;704:259-290. doi: 10.1016/bs.mie.2024.05.001. Epub 2024 Jun 18.
Rieske oxygenases catalyze an exceptionally broad range of discrete types of reactions despite the utilization of a highly conserved quaternary structure and metal cofactor complement. Oxygen activation within this family occurs at a mononuclear Fe site, which is located approximately 12 Å from a one-electron reduced Rieske-type iron-sulfur cluster. Electron transfer from the Rieske cluster to the mononuclear iron site occurs during O activation and product formation. A key question is whether all Rieske oxygenase reactions involve the same type of activated oxygen species. This question has been explored using the Rieske oxygenase salicylate 5-hydroxylase, which catalyzes both aromatic hydroxylation of salicylate and aromatic methyl hydroxylation when a methyl substituent is placed in the normal position of aromatic ring hydroxylation. We show here that the combined application of kinetic, biophysical, computational, and isotope effect methods reveals a uniform mechanism for initial O activation and substrate attack for both types of reactivity. However, the mechanism diverges during the later phases of the reactions in response to the electronic nature and geometry of the substrates as well as the lifetime of intermediates. Similar factors may be encountered broadly in the Rieske oxygenase family.
Rieske 加氧酶尽管利用高度保守的四级结构和金属辅因子组合,仍能催化极其广泛的不同类型的反应。该家族中的氧活化发生在单核 Fe 位,该位置距单电子还原 Rieske 型铁硫簇约 12 Å。在 O 活化和产物形成过程中,电子从 Rieske 簇转移到单核铁位。一个关键问题是,所有 Rieske 加氧酶反应是否都涉及相同类型的活化氧物种。这个问题已经通过 Rieske 加氧酶水杨酸 5-羟化酶进行了探讨,该酶在正常的芳香环羟化位置上甲基取代时,既能催化水杨酸的芳香族羟化,也能催化芳香族甲基羟化。我们在这里表明,动力学、生物物理、计算和同位素效应方法的综合应用揭示了两种反应类型初始 O 活化和底物攻击的统一机制。然而,在反应的后期阶段,由于底物的电子性质和几何形状以及中间体的寿命,反应机制会出现分歧。类似的因素在 Rieske 加氧酶家族中可能广泛存在。