Sayler Richard I, Thomas William C, Rose Alexander J, Marletta Michael A
California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720.
Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2411229121. doi: 10.1073/pnas.2411229121. Epub 2024 Dec 30.
Polysaccharide monooxygenase (PMO) catalysis involves the chemically difficult hydroxylation of unactivated C-H bonds in carbohydrates. The reaction requires reducing equivalents and will utilize either oxygen or hydrogen peroxide as a cosubstrate. Two key mechanistic questions are addressed here: 1) How does the enzyme regulate the timely and tightly controlled electron delivery to the mononuclear copper active site, especially when bound substrate occludes the active site? and 2) How does this electron delivery differ when utilizing oxygen or hydrogen peroxide as a cosubstrate? Using a computational approach, potential paths of electron transfer (ET) to the active site copper ion were identified in a representative AA9 family PMO from (PMO9E). When Y62, a buried residue 12 Å from the active site, is mutated to F, lower activity is observed with O. However, a WT-level activity is observed with HO as a cosubstrate indicating an important role in ET for O activation. To better understand the structural effects of mutations to Y62 and axial copper ligand Y168, crystal structures were solved of the wild type PMO9E and the variants Y62W, Y62F, and Y168F. A bioinformatic analysis revealed that position 62 is conserved as either Y or W in the AA9 family. The PMO9E Y62W variant has restored activity with O. Overall, the use of redox-active residues to supply electrons for the reaction with O appears to be widespread in the AA9 family. Furthermore, the results provide a molecular framework to understand catalysis with O versus HO.
多糖单加氧酶(PMO)催化涉及碳水化合物中未活化C-H键的化学难度较大的羟基化反应。该反应需要还原当量,并将利用氧气或过氧化氢作为共底物。本文探讨了两个关键的机制问题:1)酶如何调节向单核铜活性位点的及时且严格控制的电子传递,尤其是当结合的底物遮挡活性位点时?以及2)当使用氧气或过氧化氢作为共底物时,这种电子传递有何不同?通过计算方法,在来自(PMO9E)的代表性AA9家族PMO中确定了电子转移(ET)到活性位点铜离子的潜在途径。当距活性位点12埃的埋藏残基Y62突变为F时,以O为底物时观察到较低的活性。然而,以HO为共底物时观察到野生型水平的活性,表明其在ET中对O活化起重要作用。为了更好地理解Y62和轴向铜配体Y168突变的结构效应,解析了野生型PMO9E以及变体Y62W、Y62F和Y168F的晶体结构。生物信息学分析表明,在AA9家族中,62位保守为Y或W。PMO9E Y62W变体在以O为底物时恢复了活性。总体而言,利用氧化还原活性残基为与O的反应提供电子在AA9家族中似乎很普遍。此外,研究结果为理解以O与HO进行催化提供了一个分子框架。