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[物种名称]中Cys2His2锌指蛋白基因家族的全基因组鉴定与表达分析 。(原文中“in.”后面缺少具体物种名称)

Genome-Wide Identification and Expression Analysis of the Cys2His2 Zinc Finger Protein Gene Family in .

作者信息

Tong Zongjun, Han Xing, Duan Xinlian, Lin Junbin, Chen Jie, Xiao Jihong, Gan Ying, Gan Bingcheng, Yan Junjie

机构信息

Institute of Urban Agriculture, Chinese Academy of Agricultural Sciences, Chengdu 610000, China.

Chengdu Agricultural Science and Technology Center, Chengdu 610095, China.

出版信息

J Fungi (Basel). 2024 Sep 11;10(9):644. doi: 10.3390/jof10090644.

Abstract

Zinc finger proteins (ZFPs) are essential transcription factors in eukaryotes, particularly the extensively studied C2H2 family, which is known for its involvement in various biological processes. This research provides a thorough examination and analysis of the C2H2-ZFP gene family in . Using bioinformatics tools, 58 genes spread across 11 chromosomes were identified and scrutinized in detail for their gene structures, protein characteristics, and phylogenetic relationships. The study of phylogenetics and synteny sheds light on the evolutionary relationships among C2H2-ZFPs in and other fungi, revealing a complex evolutionary past. The identification of conserved cis-regulatory elements in the gene promoter regions suggests intricate functionalities, particularly in the developmental and stress response pathways. By utilizing RNA-seq and qRT-PCR techniques, the expression patterns of these genes were explored across different developmental stages and tissues of , unveiling distinct expression profiles. Notably, significant expression variations were observed in the stipe elongation region and pilei of various sizes, indicating potential roles in fruiting body morphogenesis. This study enhances our knowledge of the C2H2-ZFP gene family in and lays the groundwork for future investigations into their regulatory mechanisms and applications in fungal biology and biotechnology.

摘要

锌指蛋白(ZFPs)是真核生物中重要的转录因子,尤其是经过广泛研究的C2H2家族,该家族以参与各种生物过程而闻名。本研究对[具体物种]中的C2H2-ZFP基因家族进行了全面的检测与分析。利用生物信息学工具,在11条染色体上鉴定出58个基因,并对其基因结构、蛋白质特性和系统发育关系进行了详细审查。系统发育学和共线性研究揭示了[具体物种]与其他真菌中C2H2-ZFPs之间的进化关系,展现出复杂的进化历程。基因启动子区域保守顺式调控元件的鉴定表明其具有复杂的功能,特别是在发育和应激反应途径中。通过运用RNA测序和定量逆转录聚合酶链反应技术,研究了这些基因在[具体物种]不同发育阶段和组织中的表达模式,揭示了不同的表达谱。值得注意的是,在菌柄伸长区域和不同大小的菌盖中观察到显著的表达差异,表明其在子实体形态发生中可能发挥作用。本研究增进了我们对[具体物种]中C2H2-ZFP基因家族的了解,为未来深入研究其调控机制及其在真菌生物学和生物技术中的应用奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a82/11433517/b311d7759490/jof-10-00644-g001.jpg

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