• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

采用集成机器学习生存框架,鉴定由 PLA2G7 阳性巨噬细胞驱动的特发性肺纤维化患者的免疫模式。

Identification of immune patterns in idiopathic pulmonary fibrosis patients driven by PLA2G7-positive macrophages using an integrated machine learning survival framework.

机构信息

School of Pharmaceutical Sciences, Southern Medical University, Guangzhou, Guangdong, People's Republic of China.

Department of Immunology, Hebei Medical University, Shijiazhuang, People's Republic of China.

出版信息

Sci Rep. 2024 Sep 27;14(1):22369. doi: 10.1038/s41598-024-73625-z.

DOI:10.1038/s41598-024-73625-z
PMID:39333367
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11437001/
Abstract

Patients with advanced idiopathic pulmonary fibrosis (IPF), a complex and incurable lung disease with an elusive pathology, are nearly exclusive candidates for lung transplantation. Improved identification of patient subtypes can enhance early diagnosis and intervention, ultimately leading to better prognostic outcomes for patients. The goal of this study is to identify new immune patterns and biomarkers in patients. Immune subtypes in IPF patients were identified using single-sample gene set enrichment analysis, and immune subtype-related genes were explored using the weighted correlation network analysis algorithm. A machine learning integration framework was used to establish the optimal prognostic model, known as the immune-related risk score (IRS). Single-cell sequencing was conducted to investigate the major role of macrophage-derived PLA2G7 in the immune microenvironment. We assessed the stability of celecoxib in targeting PLA2G7 through molecular docking and surface plasmon resonance. IPF patients present two distinct immune subtypes, one characterized by immune activation and inflammation, and the other by immune suppression. IRS can predict the immune status and prognosis of IPF patients. Furthermore, multi-cohort analysis and single-cell sequencing analysis demonstrated the diagnostic and prognostic value of PLA2G7 derived from macrophages and its role in shaping the inflammatory immune microenvironment in IPF patients. Celecoxib could effectively and stably bind with PLA2G7. PLA2G7, as identified through IRS, demonstrates marked stability in diagnosing and predicting the prognosis of IPF patients as well as predicting their immune status. It can serve as a novel biomarker for IPF patients.

摘要

特发性肺纤维化(IPF)是一种复杂且无法治愈的肺部疾病,其病理机制尚不清楚。晚期 IPF 患者几乎是肺移植的唯一候选人群。提高对患者亚型的识别能力可以促进早期诊断和干预,从而为患者带来更好的预后结果。本研究旨在确定患者中的新免疫模式和生物标志物。使用单样本基因集富集分析(ssGSEA)鉴定 IPF 患者的免疫亚型,并使用加权相关网络分析算法(WGCNA)探索免疫亚型相关基因。采用机器学习集成框架构建最优预后模型,即免疫相关风险评分(IRS)。通过单细胞测序研究巨噬细胞衍生 PLA2G7 在免疫微环境中的主要作用。我们通过分子对接和表面等离子体共振评估了塞来昔布靶向 PLA2G7 的稳定性。IPF 患者存在两种截然不同的免疫亚型,一种以免疫激活和炎症为特征,另一种以免疫抑制为特征。IRS 可预测 IPF 患者的免疫状态和预后。此外,多队列分析和单细胞测序分析证实了巨噬细胞衍生 PLA2G7 的诊断和预后价值及其在塑造 IPF 患者炎症免疫微环境中的作用。塞来昔布可与 PLA2G7 有效且稳定结合。通过 IRS 鉴定的 PLA2G7 对诊断和预测 IPF 患者的预后以及预测其免疫状态具有显著的稳定性。它可以作为 IPF 患者的一种新型生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/8b47a678addc/41598_2024_73625_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/9c512d725f59/41598_2024_73625_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/a38337a86996/41598_2024_73625_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/d9602f972e67/41598_2024_73625_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/1acb2cdd90fe/41598_2024_73625_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/7cb6d7030723/41598_2024_73625_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/0ae8b7e9ec3a/41598_2024_73625_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/8b47a678addc/41598_2024_73625_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/9c512d725f59/41598_2024_73625_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/a38337a86996/41598_2024_73625_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/d9602f972e67/41598_2024_73625_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/1acb2cdd90fe/41598_2024_73625_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/7cb6d7030723/41598_2024_73625_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/0ae8b7e9ec3a/41598_2024_73625_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28ba/11437001/8b47a678addc/41598_2024_73625_Fig7_HTML.jpg

相似文献

1
Identification of immune patterns in idiopathic pulmonary fibrosis patients driven by PLA2G7-positive macrophages using an integrated machine learning survival framework.采用集成机器学习生存框架,鉴定由 PLA2G7 阳性巨噬细胞驱动的特发性肺纤维化患者的免疫模式。
Sci Rep. 2024 Sep 27;14(1):22369. doi: 10.1038/s41598-024-73625-z.
2
IPF-related new macrophage subpopulations and diagnostic biomarker identification - combine machine learning with single-cell analysis.特发性肺纤维化相关新巨噬细胞亚群及诊断生物标志物鉴定——机器学习与单细胞分析相结合
Respir Res. 2024 Jun 13;25(1):241. doi: 10.1186/s12931-024-02845-8.
3
Integrating cellular experiments, single-cell sequencing, and machine learning to identify endoplasmic reticulum stress biomarkers in idiopathic pulmonary fibrosis.将细胞实验、单细胞测序和机器学习相结合,以鉴定特发性肺纤维化中的内质网应激生物标志物。
Ann Med. 2024 Dec;56(1):2409352. doi: 10.1080/07853890.2024.2409352. Epub 2024 Sep 28.
4
Novel AT2 Cell Subpopulations and Diagnostic Biomarkers in IPF: Integrating Machine Learning with Single-Cell Analysis.特发性肺纤维化中的新型 AT2 细胞亚群和诊断生物标志物:机器学习与单细胞分析的整合。
Int J Mol Sci. 2024 Jul 15;25(14):7754. doi: 10.3390/ijms25147754.
5
Multi-Modal Characterization of Monocytes in Idiopathic Pulmonary Fibrosis Reveals a Primed Type I Interferon Immune Phenotype.特发性肺纤维化中单核细胞的多模态特征揭示了一种预先形成的 I 型干扰素免疫表型。
Front Immunol. 2021 Mar 5;12:623430. doi: 10.3389/fimmu.2021.623430. eCollection 2021.
6
S100A12 as Biomarker of Disease Severity and Prognosis in Patients With Idiopathic Pulmonary Fibrosis.S100A12 作为特发性肺纤维化患者疾病严重程度和预后的生物标志物。
Front Immunol. 2022 Feb 4;13:810338. doi: 10.3389/fimmu.2022.810338. eCollection 2022.
7
Investigation of a Hypoxia-Immune-Related Microenvironment Gene Signature and Prediction Model for Idiopathic Pulmonary Fibrosis.探讨特发性肺纤维化缺氧免疫相关微环境基因特征及预测模型。
Front Immunol. 2021 Jun 14;12:629854. doi: 10.3389/fimmu.2021.629854. eCollection 2021.
8
Single-cell combined with transcriptome sequencing to explore the molecular mechanism of cell communication in idiopathic pulmonary fibrosis.单细胞联合转录组测序探索特发性肺纤维化细胞通讯的分子机制。
J Cell Mol Med. 2024 Jun;28(12):e18499. doi: 10.1111/jcmm.18499.
9
Identification of PANoptosis-related genes for idiopathic pulmonary fibrosis by machine learning and molecular subtype analysis.通过机器学习和分子亚型分析鉴定特发性肺纤维化的 PANoptosis 相关基因。
Sci Rep. 2024 Oct 14;14(1):24068. doi: 10.1038/s41598-024-76263-7.
10
Identifying oxidative stress-related biomarkers in idiopathic pulmonary fibrosis in the context of predictive, preventive, and personalized medicine using integrative omics approaches and machine-learning strategies.在预测性、预防性和个性化医学背景下,使用整合组学方法和机器学习策略识别特发性肺纤维化中与氧化应激相关的生物标志物。
EPMA J. 2023 Jul 31;14(3):417-442. doi: 10.1007/s13167-023-00334-4. eCollection 2023 Sep.

引用本文的文献

1
Integrating machine learning with bioinformatics for predicting idiopathic pulmonary fibrosis prognosis: developing an individualized clinical prediction tool.将机器学习与生物信息学相结合以预测特发性肺纤维化的预后:开发一种个性化临床预测工具。
Exp Biol Med (Maywood). 2024 Dec 23;249:10215. doi: 10.3389/ebm.2024.10215. eCollection 2024.

本文引用的文献

1
Celecoxib attenuates hindlimb unloading-induced muscle atrophy via suppressing inflammation, oxidative stress and ER stress by inhibiting STAT3.塞来昔布通过抑制 STAT3 抑制炎症、氧化应激和内质网应激来减轻后肢去负荷引起的肌肉萎缩。
Inflammopharmacology. 2024 Apr;32(2):1633-1646. doi: 10.1007/s10787-024-01454-7. Epub 2024 Mar 7.
2
Osteopontin and fibronectin in lung tissue, serum, and bronchoalveolar lavage fluid of dogs with idiopathic pulmonary fibrosis and control dogs.特发性肺纤维化犬肺组织、血清和支气管肺泡灌洗液中的骨桥蛋白和纤维连接蛋白与正常犬对照。
J Vet Intern Med. 2023 Nov-Dec;37(6):2468-2477. doi: 10.1111/jvim.16870. Epub 2023 Oct 18.
3
Dynamic atlas of immune cells reveals multiple functional features of macrophages associated with progression of pulmonary fibrosis.
免疫细胞动态图谱揭示了与肺纤维化进展相关的巨噬细胞的多种功能特征。
Front Immunol. 2023 Sep 13;14:1230266. doi: 10.3389/fimmu.2023.1230266. eCollection 2023.
4
The lipoprotein-associated phospholipase A2 inhibitor Darapladib sensitises cancer cells to ferroptosis by remodelling lipid metabolism.载脂蛋白相关磷脂酶 A2 抑制剂达拉普利单抗通过重塑脂质代谢使癌细胞对铁死亡敏感。
Nat Commun. 2023 Sep 15;14(1):5728. doi: 10.1038/s41467-023-41462-9.
5
Integrative analysis reveals the recurrent genetic etiologies in idiopathic pulmonary fibrosis.综合分析揭示了特发性肺纤维化的反复发生的遗传病因。
QJM. 2023 Dec 27;116(12):983-992. doi: 10.1093/qjmed/hcad206.
6
Precision medicine advances in idiopathic pulmonary fibrosis.特发性肺纤维化的精准医学进展。
EBioMedicine. 2023 Sep;95:104766. doi: 10.1016/j.ebiom.2023.104766. Epub 2023 Aug 23.
7
An integrated cell atlas of the lung in health and disease.肺部健康与疾病的细胞整合图谱
Nat Med. 2023 Jun;29(6):1563-1577. doi: 10.1038/s41591-023-02327-2. Epub 2023 Jun 8.
8
Lipid metabolism in idiopathic pulmonary fibrosis: From pathogenesis to therapy.特发性肺纤维化中的脂质代谢:从发病机制到治疗。
J Mol Med (Berl). 2023 Aug;101(8):905-915. doi: 10.1007/s00109-023-02336-1. Epub 2023 Jun 8.
9
Dictionary learning for integrative, multimodal and scalable single-cell analysis.基于字典学习的综合、多模态和可扩展的单细胞分析。
Nat Biotechnol. 2024 Feb;42(2):293-304. doi: 10.1038/s41587-023-01767-y. Epub 2023 May 25.
10
Use of machine learning-based integration to develop an immune-related signature for improving prognosis in patients with gastric cancer.基于机器学习的整合用于开发免疫相关特征,以改善胃癌患者的预后。
Sci Rep. 2023 Apr 29;13(1):7019. doi: 10.1038/s41598-023-34291-9.