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基于生物信息学的冻结肩中铁死亡相关分析。

Bioinformatics analysis of ferroptosis in frozen shoulder.

机构信息

Department of Rehabilitation Medicine, Wendeng Orthopedic and Traumatic Hospital, Weihai City, Shandong Province, China.

Department of Massage, Wendeng Orthopedic and Traumatic Hospital, Weihai City, Shandong Province, China.

出版信息

BMC Med Genomics. 2024 Sep 27;17(1):234. doi: 10.1186/s12920-024-02011-5.

Abstract

OBJECTIVES

Frozen shoulder is a common shoulder disease that significantly affects the patient's life and work. Ferroptosis is a new type of programmed cell death, which is involved in many diseases. However, there have been no studies reporting the relationship between frozen shoulders and ferroptosis. This study identified potential molecular markers of ferroptosis in frozen shoulders to provide more effective strategies for the treatment of frozen shoulders.

METHODS

GSE238053 was downloaded from the Gene Expression Omnibus (GEO) dataset and intersected with ferroptosis genes to obtain differentially expressed genes (DEGs). The signaling pathways and biological functions of DEGs were performed by WebGestalt and Metascape. The interactions related to these DEGs and the key genes between frozen shoulders and ferroptosis was performed by STRING and Cytoscape. A frozen shoulders rat model was used to validate our predicted genes, Western Blot and qRT-PCR was used to assess the expression levels of our genes of interest.

RESULTS

A total of 34 DEGs between GSE238053 and Ferroptosis Database were obtained, most of which were involved in the HIF-1 signaling pathway and inflammatory response. A protein-protein interaction network was obtained by Cytoscape and the key genes (IL-6, HMOX1 and TLR4) were screened by MCODE. Our results of Western Blot showed that the protein expression level of TLR4 and HMOX1 were elevated, and the protein level of IL-6 decreased in frozen shoulders rat model. The mRNA level after frozen shoulders showed that IL-6 was upregulated, whereas TLR4 and HMOX1were downregulated.

CONCLUSIONS

The results demonstrated that ferroptosis may affect the pathological process of frozen shoulders through these signaling pathways and genes. The identification of IL-6, HMOX1 and TLR4 genes can provide new therapeutic targets for frozen shoulders.

摘要

目的

冻结肩是一种常见的肩部疾病,严重影响患者的生活和工作。铁死亡是一种新型的程序性细胞死亡,涉及多种疾病。然而,目前还没有研究报道冻结肩与铁死亡之间的关系。本研究旨在确定冻结肩中铁死亡的潜在分子标志物,为冻结肩的治疗提供更有效的策略。

方法

从基因表达综合数据库(GEO)下载 GSE238053 数据集,并与铁死亡基因进行交集,获得差异表达基因(DEGs)。使用 WebGestalt 和 Metascape 分析 DEGs 的信号通路和生物学功能。使用 STRING 和 Cytoscape 分析与这些 DEGs 以及冻结肩和铁死亡之间关键基因相关的相互作用。使用冻结肩大鼠模型验证我们预测的基因,采用 Western blot 和 qRT-PCR 评估我们感兴趣基因的表达水平。

结果

共获得 GSE238053 和铁死亡数据库之间的 34 个 DEGs,其中大多数涉及 HIF-1 信号通路和炎症反应。通过 Cytoscape 获得蛋白质-蛋白质相互作用网络,并通过 MCODE 筛选关键基因(IL-6、HMOX1 和 TLR4)。我们的 Western blot 结果表明,TLR4 和 HMOX1 的蛋白表达水平升高,而冻结肩大鼠模型中 IL-6 的蛋白水平降低。冻结肩后,IL-6 的 mRNA 水平上调,而 TLR4 和 HMOX1 的 mRNA 水平下调。

结论

这些结果表明,铁死亡可能通过这些信号通路和基因影响冻结肩的病理过程。IL-6、HMOX1 和 TLR4 基因的鉴定可为冻结肩提供新的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6c6/11428309/f672c8adf60b/12920_2024_2011_Sch1_HTML.jpg

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