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基于深度学习和计算机视觉的高精度自动化大豆表型特征提取

High-Precision Automated Soybean Phenotypic Feature Extraction Based on Deep Learning and Computer Vision.

作者信息

Zhang Qi-Yuan, Fan Ke-Jun, Tian Zhixi, Guo Kai, Su Wen-Hao

机构信息

College of Engineering, China Agricultural University, Beijing 100083, China.

Yazhouwan National Laboratory, Sanya 572000, China.

出版信息

Plants (Basel). 2024 Sep 19;13(18):2613. doi: 10.3390/plants13182613.

DOI:10.3390/plants13182613
PMID:39339587
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11435354/
Abstract

The automated collection of plant phenotypic information has become a trend in breeding and smart agriculture. Four YOLOv8-based models were used to segment mature soybean plants placed in a simple background in a laboratory environment, identify pods, distinguish the number of soybeans in each pod, and obtain soybean phenotypes. The YOLOv8-Repvit model yielded the most optimal recognition results, with an R2 coefficient value of 0.96 for both pods and beans, and the RMSE values were 2.89 and 6.90, respectively. Moreover, a novel algorithm was devised to efficiently differentiate between the main stem and branches of soybean plants, called the midpoint coordinate algorithm (MCA). This was accomplished by linking the white pixels representing the stems in each column of the binary image to draw curves that represent the plant structure. The proposed method reduces computational time and spatial complexity in comparison to the A* algorithm, thereby providing an efficient and accurate approach for measuring the phenotypic characteristics of soybean plants. This research lays a technical foundation for obtaining the phenotypic data of densely overlapped and partitioned mature soybean plants under field conditions at harvest.

摘要

植物表型信息的自动采集已成为育种和智慧农业的发展趋势。使用了四种基于YOLOv8的模型对放置在实验室环境简单背景中的成熟大豆植株进行分割,识别豆荚,区分每个豆荚中的大豆数量,并获取大豆表型。YOLOv8-Repvit模型产生了最优化的识别结果,豆荚和豆子的R2系数值均为0.96,RMSE值分别为2.89和6.90。此外,还设计了一种新算法来有效区分大豆植株的主茎和分枝,称为中点坐标算法(MCA)。这是通过连接二值图像每列中代表茎的白色像素来绘制代表植株结构的曲线来实现的。与A*算法相比,该方法减少了计算时间和空间复杂度,从而为测量大豆植株的表型特征提供了一种高效准确的方法。本研究为收获期田间条件下获取密集重叠和分割的成熟大豆植株的表型数据奠定了技术基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/512c69017e9b/plants-13-02613-g014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/2ba5ebbe0b5a/plants-13-02613-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/8c2cb820fd1d/plants-13-02613-g004.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/96562df56ea9/plants-13-02613-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/53b701551686/plants-13-02613-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/c39331bc0f7a/plants-13-02613-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/b6cfb1dd7a57/plants-13-02613-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/5656d464b261/plants-13-02613-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/8a172200bf5f/plants-13-02613-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/73c0cc334274/plants-13-02613-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/63f53529d75e/plants-13-02613-g013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/512c69017e9b/plants-13-02613-g014.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/2ba5ebbe0b5a/plants-13-02613-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/1c30fb1b713e/plants-13-02613-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/47e97e4e4793/plants-13-02613-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/8c2cb820fd1d/plants-13-02613-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/91c1dea404af/plants-13-02613-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/96562df56ea9/plants-13-02613-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/53b701551686/plants-13-02613-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/c39331bc0f7a/plants-13-02613-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/b6cfb1dd7a57/plants-13-02613-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/5656d464b261/plants-13-02613-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/8a172200bf5f/plants-13-02613-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/73c0cc334274/plants-13-02613-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/63f53529d75e/plants-13-02613-g013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/475d/11435354/512c69017e9b/plants-13-02613-g014.jpg

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