Department of Mathematics, University of California, Riverside, California, United States of America.
Interdisciplinary Center for Quantitative Modeling in Biology, University of California, Riverside, California, United States of America.
PLoS Comput Biol. 2024 Sep 30;20(9):e1012491. doi: 10.1371/journal.pcbi.1012491. eCollection 2024 Sep.
Understanding the mechanisms of the cellular aging processes is crucial for attempting to extend organismal lifespan and for studying age-related degenerative diseases. Yeast cells divide through budding, providing a classical biological model for studying cellular aging. With their powerful genetics, relatively short cell cycle, and well-established signaling pathways also found in animals, yeast cells offer valuable insights into the aging process. Recent experiments suggested the existence of two aging modes in yeast characterized by nucleolar and mitochondrial declines, respectively. By analyzing experimental data, this study shows that cells evolving into those two aging modes behave differently when they are young. While buds grow linearly in both modes, cells that consistently generate spherical buds throughout their lifespan demonstrate greater efficacy in controlling bud size and growth rate at young ages. A three-dimensional multiscale chemical-mechanical model was developed and used to suggest and test hypothesized impacts of aging on bud morphogenesis. Experimentally calibrated model simulations showed that during the early stage of budding, tubular bud shape in one aging mode could be generated by locally inserting new materials at the bud tip, a process guided by the polarized Cdc42 signal. Furthermore, the aspect ratio of the tubular bud could be stabilized during the late stage as observed in experiments in this work. The model simulation results suggest that the localization of new cell surface material insertion, regulated by chemical signal polarization, could be weakened due to cellular aging in yeast and other cell types, leading to the change and stabilization of the bud aspect ratio.
了解细胞衰老过程的机制对于试图延长生物体的寿命和研究与年龄相关的退行性疾病至关重要。酵母细胞通过出芽分裂,为研究细胞衰老提供了一个经典的生物学模型。由于其强大的遗传学、相对较短的细胞周期以及在动物中也发现的成熟信号通路,酵母细胞为衰老过程提供了有价值的见解。最近的实验表明,酵母中存在两种衰老模式,分别以核仁减少和线粒体减少为特征。通过分析实验数据,本研究表明,在年轻时,进化为这两种衰老模式的细胞表现出不同的行为。虽然在两种模式中芽都呈线性生长,但在整个生命周期中始终产生球形芽的细胞在年轻时控制芽大小和生长速度的效果更好。开发了一个三维多尺度化学机械模型,并用于提出和测试衰老对芽形态发生的假设影响。经过实验校准的模型模拟表明,在出芽的早期阶段,一种衰老模式中的管状芽形状可以通过在芽尖局部插入新材料来生成,这一过程由极化的 Cdc42 信号指导。此外,在本工作中的实验中观察到,在后期阶段,管状芽的纵横比可以稳定下来。模型模拟结果表明,由于酵母和其他细胞类型的细胞衰老,化学信号极化调节的新细胞表面材料插入的定位可能会减弱,导致芽纵横比的变化和稳定。