Rožić Tomislav, Teynor Matthew S, Došlić Nađa, Leitner David M, Solomon Gemma C
Nano-Science Center and Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark.
NNF Quantum Computing Programme, Niels Bohr Institute, University of Copenhagen, DK-2100 Copenhagen, Denmark.
J Chem Theory Comput. 2024 Oct 22;20(20):9048-9059. doi: 10.1021/acs.jctc.4c01011. Epub 2024 Oct 2.
The kinetics of many chemical reactions can be readily explained with a statistical approach, for example, using a form of transition state theory and comparing calculated Gibbs energies along the reaction coordinate(s). However, there are cases where this approach fails, notably when the vibrational relaxation of the molecule to its statistical equilibrium occurs on the same time scale as the reaction dynamics, whether it is caused by slow relaxation, a fast reaction, or both. These nonstatistical phenomena are then often explored computationally using (quasi)classical ab initio molecular dynamics by calculating a large number of trajectories while being prone to issues such as zero-point energy leakage. On the other side of the field, we see resource-intensive quantum dynamics simulations, which significantly limit the size of explorable systems. We find that using a Fermi's golden rule type of model for vibrational relaxation, based on anharmonic coupling constants, we can extract the same qualitative information while giving insights into how to enhance (or destroy) the bottlenecks causing the phenomena. We present this model as a middle ground for exploring complex nonstatistical behavior, capable of treating medium-sized organic molecules or biologically relevant fragments. We also cover the challenges involved, in particular quantifying the excess energy in terms of vibrational modes. Relying on readily available electronic structure methods and providing results in a simple master equation form, this model shows promise as a screening tool for opportunities in mode-selective chemistry without external control.
许多化学反应的动力学可以用统计方法轻松解释,例如,使用过渡态理论的一种形式,并比较沿反应坐标计算的吉布斯自由能。然而,在某些情况下,这种方法会失效,特别是当分子振动弛豫到其统计平衡的时间尺度与反应动力学相同时,无论这是由缓慢弛豫、快速反应还是两者共同引起的。然后,这些非统计现象通常通过计算(准)经典从头算分子动力学来探索,即计算大量轨迹,但容易出现零点能泄漏等问题。在该领域的另一方面,我们看到资源密集型的量子动力学模拟,这显著限制了可探索系统的大小。我们发现,使用基于非谐耦合常数的费米黄金规则型振动弛豫模型,我们可以提取相同的定性信息,同时深入了解如何增强(或消除)导致这些现象的瓶颈。我们将此模型作为探索复杂非统计行为的中间立场,它能够处理中等大小的有机分子或与生物学相关的片段。我们还讨论了其中涉及的挑战,特别是根据振动模式量化过剩能量。该模型依赖于现成的电子结构方法,并以简单的主方程形式给出结果,有望成为一种无需外部控制的模式选择性化学机会筛选工具。