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可解释机器学习辅助血清外泌体光学破译用于肺癌的早期检测、分期和亚型分类。

Interpretable Machine Learning-Aided Optical Deciphering of Serum Exosomes for Early Detection, Staging, and Subtyping of Lung Cancer.

机构信息

Shanghai Institute for Pediatric Research, Shanghai Key Laboratory of Pediatric Gastroenterology and Nutrition, Xin Hua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200092, China.

Department of Medical Oncology, Department of Radiology, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China.

出版信息

Anal Chem. 2024 Oct 15;96(41):16227-16235. doi: 10.1021/acs.analchem.4c02914. Epub 2024 Oct 3.

Abstract

Lung cancer (LC) is the leading cause of cancer-related mortality worldwide, underscoring an urgent need for strategies that enable early detection and phenotypic classification. Here, we conducted a label-free surface-enhanced Raman spectroscopic (SERS) analysis of serum exosomes from 643 participants to elucidate the biochemical deregulation associated with LC progression and the unique phenotypes of different LC subtypes. Iodide-modified silver nanofilms were prepared to rapidly acquire SERS spectra with a high signal-to-noise ratio using 0.5 μL of patient exosomes. We performed interpretable and automated machine learning (ML) analysis of differential SERS features of serum exosomes to build LC diagnostic models, which achieved accuracies of 100% and 81% for stage I lung adenocarcinoma and its preneoplasia, respectively. In addition, the ML-derived exosomal SERS models effectively recognized different LC subtypes and disease stages to guide precision treatment. Our findings demonstrate that spectral fingerprinting of circulating exosomes holds promise for decoding the clinical status of LC, thus aiding in improving the clinical management of patients.

摘要

肺癌(LC)是全球癌症相关死亡的主要原因,这突显了迫切需要能够实现早期检测和表型分类的策略。在这里,我们对来自 643 名参与者的血清外泌体进行了无标记表面增强拉曼光谱(SERS)分析,以阐明与 LC 进展相关的生化失调以及不同 LC 亚型的独特表型。我们制备了碘化物修饰的银纳米薄膜,以便使用 0.5 μL 的患者外泌体快速获得具有高信噪比的 SERS 光谱。我们对血清外泌体的差异 SERS 特征进行了可解释和自动化的机器学习(ML)分析,以构建 LC 诊断模型,对 I 期肺腺癌及其前病变的准确率分别达到了 100%和 81%。此外,基于 ML 的外泌体 SERS 模型可有效识别不同的 LC 亚型和疾病阶段,以指导精准治疗。我们的研究结果表明,循环外泌体的光谱指纹图谱有望用于解码 LC 的临床状态,从而有助于改善患者的临床管理。

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