Department of Engineering and Natural Sciences, Bandırma Onyedi Eylül University, 10200 Bandırma, Balıkesir, Turkey.
Department of Chemistry, Süleyman Demirel University, 32260 Isparta, Turkey.
J Mol Graph Model. 2024 Dec;133:108878. doi: 10.1016/j.jmgm.2024.108878. Epub 2024 Oct 4.
The energy and structure of Bjerrum defects in structure II gas hydrates were investigated by using first-principle calculations for finite-size clusters and periodic 3D lattice systems. The formation energies of these defects were calculated for the first time when the cages of the structure II structure were completely empty and the large cage was filled with a THF molecule. Analogous to findings in ice structures, one of the hydrogen atoms forming the D defect was noted to orient toward the cage. If the excess proton resides in the large cage, it acts as an attraction center for the polar guest molecule, i.e., THF. Therefore, the large cage guest THF molecule stabilizes the D/L defect pair and isolated D/L defect formation energies by forming hydrogen bonds with the D defect. In such cases, the defect structure representing a D/L defect pair containing a THF molecule interacting with one of the hydrogen atoms of the D defect mirrors the guest-induced ones. Notably, the classical Bjerrum defect and the guest-induced Bjerrum defect exhibit a similar phenomenon in defective structures. Contrary to existing literature, it is evident that guest-induced Bjerrum defects involve both the L and D components. The insights gained from this study could potentially offer an alternative perspective to understand various experimental observations, such as those related to dielectric and NMR properties.
通过使用有限尺寸簇和周期性 3D 晶格系统的第一性原理计算,研究了结构 II 天然气水合物中 Bjerrum 缺陷的能量和结构。首次计算了这些缺陷的形成能,此时结构 II 结构的笼完全为空,并且大笼中充满了 THF 分子。类似于冰结构中的发现,形成 D 缺陷的氢原子之一被注意到朝向笼取向。如果多余的质子位于大笼中,它将作为极性客体分子(即 THF)的吸引中心。因此,大笼客体 THF 分子通过与 D 缺陷形成氢键来稳定 D/L 缺陷对和孤立的 D/L 缺陷形成能。在这种情况下,代表含有与 D 缺陷的一个氢原子相互作用的 THF 分子的 D/L 缺陷对的缺陷结构反映了客体诱导的缺陷结构。值得注意的是,经典的 Bjerrum 缺陷和客体诱导的 Bjerrum 缺陷在缺陷结构中表现出类似的现象。与现有文献相反,显然客体诱导的 Bjerrum 缺陷涉及 L 和 D 两部分。这项研究的结果可能为理解各种实验观察提供一个替代视角,例如与介电和 NMR 性质相关的观察。