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基于高通量测序分析不同地区马铃薯块茎内生细菌群落的组成、多样性及其对琥珀酸生物合成的影响

Composition and diversity of endophytic bacterial communities in the tubers of from different regions and their effects on succinate biosynthesis based on high-throughput sequencing.

作者信息

Zhang Peng, Ding Wei, Zheng Heng

机构信息

Research Center for Ecology, College of Science, Tibet University, Lhasa, 850000 China.

School of Chemistry, Chemical Engineering and Life Sciences, Wuhan University of Technology, Wuhan, 430070 China.

出版信息

3 Biotech. 2024 Nov;14(11):262. doi: 10.1007/s13205-024-04108-1. Epub 2024 Oct 6.

Abstract

In this study, high-throughput sequencing (HTS) technology was used to investigate the composition and diversity of endophytic bacteria and their effects on succinic acid biosynthesis in tubers from three different geographical locations (MS, SL, and ZT). A total of 1777 amplicon sequence variants (ASVs) were annotated, and the diversity and composition of endophytic bacteria in tubers were significantly different among different regions. The ZT samples presented the highest α diversity, and the Shannon diversity, richness, and Pielou evenness index were all ZT > MS > SL. Co-occurrence network analysis revealed that endophytic bacterial groups such as , , , and were key groups in the endophytic bacterial interaction network, indicating that they play a role in maintaining community stability. In addition, some endophytic bacteria were associated with the biosynthesis of succinic acid, a key bioactive compound in . The succinate content was positively correlated with the genera , , , and , while it was negatively correlated with the genera , , and . These findings highlight the key role of endophytic bacteria in regulating the efficacy of . These findings provide key information for further elucidating the mechanism by which endophytic bacteria affect the synthesis of bioactive compounds.

摘要

在本研究中,利用高通量测序(HTS)技术研究了来自三个不同地理位置(MS、SL和ZT)的块茎中内生细菌的组成和多样性及其对琥珀酸生物合成的影响。共注释了1777个扩增子序列变体(ASV),不同地区块茎中内生细菌的多样性和组成存在显著差异。ZT样本的α多样性最高,香农多样性、丰富度和皮洛均匀度指数均为ZT>MS>SL。共现网络分析表明,、、和等内生细菌类群是内生细菌相互作用网络中的关键类群,表明它们在维持群落稳定性方面发挥作用。此外,一些内生细菌与中一种关键生物活性化合物琥珀酸的生物合成有关。琥珀酸盐含量与、、和属呈正相关,而与、和属呈负相关。这些发现突出了内生细菌在调节药效方面的关键作用。这些发现为进一步阐明内生细菌影响生物活性化合物合成的机制提供了关键信息。

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