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暴露于柴油颗粒物的H9C2细胞的转录组和RNA测序分析

Transcriptome and RNA sequencing analysis of H9C2 cells exposed to diesel particulate matter.

作者信息

Nho Kyoung Jin, Shin Jae Hoon, Baek Jin Ee, Choi Sung Won

机构信息

Department of Pathogenic Laboratory Research, Institute of Occupation and Environment, Korea Workers' Compensation & Welfare Service, 478, Munemi-ro, Bupyeong-gu, Incheon, 21417, Republic of Korea.

出版信息

Heliyon. 2024 Sep 18;10(19):e38082. doi: 10.1016/j.heliyon.2024.e38082. eCollection 2024 Oct 15.

Abstract

Although air pollution has been classified as a risk factor for heart disease, the underlying mechanisms remain nebulous. Therefore, this study investigated the effect of diesel particulate matter (DPM) exposure on cardiomyocytes and identified differentially expressed genes (DEGs) induced by DPM. DPM treatment decreased H9C2 cell viability and increased cytotoxicity. Ten genes showed statistically significant differential expression following treatment with DPM at 25 and 100 μg/ml for 3 h. A total of 273 genes showed statistically significant differential expression following treatment with DPM at 25 and 100 μg/ml for 24 h. Signaling pathway analysis revealed that the DEGs were related to the 'reactive oxygens species,' 'IL-17,' and 'fluid shear stress and atherosclerosis' signaling pathways. , , and genes were significantly upregulated among the selected DEGs. This study identified DPM-induced DEGs and verified the selected genes using qRT-PCR and western blotting. The findings provide insights into the molecular events in cardiomyocytes following exposure to DPM.

摘要

尽管空气污染已被归类为心脏病的一个风险因素,但其潜在机制仍不明确。因此,本研究调查了柴油颗粒物(DPM)暴露对心肌细胞的影响,并鉴定了由DPM诱导的差异表达基因(DEG)。DPM处理降低了H9C2细胞活力并增加了细胞毒性。在用25和100μg/ml DPM处理3小时后,有10个基因表现出统计学上显著的差异表达。在用25和100μg/ml DPM处理24小时后,共有273个基因表现出统计学上显著的差异表达。信号通路分析显示,这些DEG与“活性氧物种”、“IL-17”和“流体剪切力与动脉粥样硬化”信号通路有关。在选定的DEG中, 、 和 基因显著上调。本研究鉴定了DPM诱导的DEG,并使用qRT-PCR和蛋白质印迹法验证了选定的基因。这些发现为暴露于DPM后心肌细胞中的分子事件提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0f3d/11462235/0e3214c49e8f/gr1.jpg

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