Department of Cardiology, Shanghai East Hospital, School of Medicine, Tongji University, Jimo Road 150, Shanghai, 200120, China.
Mol Med. 2024 Oct 10;30(1):169. doi: 10.1186/s10020-024-00944-2.
External constraints, such as development, disease, and environment, can induce changes in epigenomic patterns that may profoundly impact the health trajectory of fetuses and neonates into adulthood, influencing conditions like obesity. Epigenetic modifications encompass processes including DNA methylation, covalent histone modifications, and RNA-mediated regulation. Beyond forward cellular differentiation (cell programming), terminally differentiated cells are reverted to a pluripotent or even totipotent state, that is, cellular reprogramming. Epigenetic modulators facilitate or erase histone and DNA modifications both in vivo and in vitro during programming and reprogramming. Noticeably, obesity is a complex metabolic disorder driven by both genetic and environmental factors. Increasing evidence suggests that epigenetic modifications play a critical role in the regulation of gene expression involved in adipogenesis, energy homeostasis, and metabolic pathways. Hence, we discuss the mechanisms by which epigenetic interventions influence obesity, focusing on DNA methylation, histone modifications, and non-coding RNAs. We also analyze the methodologies that have been pivotal in uncovering these epigenetic regulations, i.e., Large-scale screening has been instrumental in identifying genes and pathways susceptible to epigenetic control, particularly in the context of adipogenesis and metabolic homeostasis; Single-cell RNA sequencing (scRNA-seq) provides a high-resolution view of gene expression patterns at the individual cell level, revealing the heterogeneity and dynamics of epigenetic regulation during cellular differentiation and reprogramming; Chromatin immunoprecipitation (ChIP) assays, focused on candidate genes, have been crucial for characterizing histone modifications and transcription factor binding at specific genomic loci, thereby elucidating the epigenetic mechanisms that govern cellular programming; Somatic cell nuclear transfer (SCNT) and cell fusion techniques have been employed to study the epigenetic reprogramming accompanying cloning and the generation of hybrid cells with pluripotent characteristics, etc. These approaches have been instrumental in identifying specific epigenetic marks and pathways implicated in obesity, providing a foundation for developing targeted therapeutic interventions. Understanding the dynamic interplay between epigenetic regulation and cellular programming is crucial for advancing mechanism and clinical management of obesity.
外在的限制因素,如发育、疾病和环境,可能会引起表观基因组模式的改变,这些改变可能会深刻影响胎儿和新生儿的健康轨迹,导致肥胖等疾病。表观遗传修饰包括 DNA 甲基化、组蛋白共价修饰和 RNA 介导的调控等过程。除了正向细胞分化(细胞编程)之外,终末分化细胞还可以被重新编程为多能性甚至全能性状态,即细胞重编程。在编程和重编程过程中,表观遗传调节剂可以促进或消除体内和体外的组蛋白和 DNA 修饰。值得注意的是,肥胖是一种由遗传和环境因素共同驱动的复杂代谢紊乱。越来越多的证据表明,表观遗传修饰在调节脂肪生成、能量稳态和代谢途径中涉及的基因表达中起着关键作用。因此,我们讨论了表观遗传干预影响肥胖的机制,重点讨论了 DNA 甲基化、组蛋白修饰和非编码 RNA。我们还分析了揭示这些表观遗传调控的关键方法,即大规模筛选在识别受表观遗传控制的基因和途径方面发挥了重要作用,特别是在脂肪生成和代谢稳态方面;单细胞 RNA 测序(scRNA-seq)提供了个体细胞水平上基因表达模式的高分辨率视图,揭示了细胞分化和重编程过程中表观遗传调控的异质性和动态性;染色质免疫沉淀(ChIP)检测,针对候选基因,对于描述特定基因组位置的组蛋白修饰和转录因子结合至关重要,从而阐明了控制细胞编程的表观遗传机制;体细胞核转移(SCNT)和细胞融合技术已被用于研究克隆和产生具有多能特性的杂交细胞伴随的表观遗传重编程等。这些方法在确定与肥胖相关的特定表观遗传标记和途径方面发挥了重要作用,为开发靶向治疗干预提供了基础。理解表观遗传调控与细胞编程之间的动态相互作用对于推进肥胖的机制和临床管理至关重要。