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Large-Scale Comparative Analysis of Canine and Human Osteosarcomas Uncovers Conserved Clinically Relevant Tumor Microenvironment Subtypes.

作者信息

Patkar Sushant, Mannheimer Joshua, Harmon Stephanie A, Ramirez Christina J, Mazcko Christina N, Choyke Peter L, Brown Gregory Thomas, Turkbey Baris, LeBlanc Amy K, Beck Jessica A

机构信息

Artificial Intelligence Resource, Molecular Imaging Branch, National Cancer Institute, NIH, Bethesda, Maryland.

Pfizer Inc., Andover, Massachusetts.

出版信息

Clin Cancer Res. 2024 Dec 16;30(24):5630-5642. doi: 10.1158/1078-0432.CCR-24-1854.


DOI:10.1158/1078-0432.CCR-24-1854
PMID:39412757
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11647208/
Abstract

PURPOSE: Osteosarcoma is an aggressive bone cancer lacking robust biomarkers for personalized treatment. Despite its scarcity in humans, it is relatively common in adult pet dogs. This study aimed to analyze clinically annotated bulk tumor transcriptomic datasets of canine and patients with human osteosarcoma to identify potentially conserved patterns of disease progression. EXPERIMENTAL DESIGN: Bulk transcriptomic data from 245 pet dogs with treatment-naïve appendicular osteosarcoma were analyzed using deconvolution to characterize the tumor microenvironment (TME). The TME of both primary and metastatic tumors derived from the same dog was compared, and its impact on canine survival was assessed. A machine learning model was developed to classify the TME based on its inferred composition using canine tumor data. This model was applied to eight independent human osteosarcoma datasets to assess its generalizability and prognostic value. RESULTS: This study found three distinct TME subtypes of canine osteosarcoma based on cell type composition of bulk tumor samples: immune enriched, immune enriched dense extracellular matrix-like, and immune desert. These three TME-based subtypes of canine osteosarcomas were conserved in humans and could predict progression-free survival outcomes of human patients, independent of conventional prognostic factors such as percent tumor necrosis post standard of care chemotherapy treatment and disease stage at diagnosis. CONCLUSIONS: These findings demonstrate the potential of leveraging data from naturally occurring cancers in canines to model the complexity of the human osteosarcoma TME, offering a promising avenue for the discovery of novel biomarkers and developing more effective precision oncology treatments.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/ecb9d61bea34/ccr-24-1854_f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/17f1de88fa67/ccr-24-1854_f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/9ee03309e360/ccr-24-1854_f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/35c55351f70e/ccr-24-1854_f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/18c27b2b0d82/ccr-24-1854_f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/ecb9d61bea34/ccr-24-1854_f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/17f1de88fa67/ccr-24-1854_f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/9ee03309e360/ccr-24-1854_f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/35c55351f70e/ccr-24-1854_f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/18c27b2b0d82/ccr-24-1854_f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1594/11647208/ecb9d61bea34/ccr-24-1854_f5.jpg

相似文献

[1]
Large-Scale Comparative Analysis of Canine and Human Osteosarcomas Uncovers Conserved Clinically Relevant Tumor Microenvironment Subtypes.

Clin Cancer Res. 2024-12-16

[2]
Large Scale Comparative Deconvolution Analysis of the Canine and Human Osteosarcoma Tumor Microenvironment Uncovers Conserved Clinically Relevant Subtypes.

bioRxiv. 2023-9-29

[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
NFATC3 enhances osteosarcoma progression by increasing PD-L1 and CXCL2 levels.

Med Oncol. 2025-7-29

[2]
Insights from veterinary models for advancing oncolytic virotherapy through comparative oncology.

Front Mol Biosci. 2025-5-22

[3]
Spatial Transcriptomics Advances the Use of Canine Patients in Cancer Research: Analysis of Osteosarcoma-Bearing Pet Dogs Enrolled in a Clinical Trial.

Clin Cancer Res. 2025-7-15

[4]
The tumor microenvironment of metastatic osteosarcoma in the human and canine lung.

Commun Biol. 2025-5-15

[5]
Immunological responses and clinical outcomes in dogs with osteosarcoma receiving standard therapy and a Listeria vaccine expressing HER2.

Mol Ther. 2025-4-2

本文引用的文献

[1]
Combining PD-1/PD-L1 blockade with type I interferon in cancer therapy.

Front Immunol. 2023

[2]
Patterns of metastatic progression and association with clinical outcomes in canine osteosarcoma: A necropsy study of 83 dogs.

Vet Comp Oncol. 2023-12

[3]
Transcriptional profiling of canine osteosarcoma identifies prognostic gene expression signatures with translational value for humans.

Commun Biol. 2023-8-17

[4]
Managing the immune microenvironment of osteosarcoma: the outlook for osteosarcoma treatment.

Bone Res. 2023-2-27

[5]
Multi-omics analysis identifies osteosarcoma subtypes with distinct prognosis indicating stratified treatment.

Nat Commun. 2022-11-23

[6]
Immune checkpoint inhibitors in osteosarcoma: A hopeful and challenging future.

Front Pharmacol. 2022-10-17

[7]
Ninety Percent or Greater Tumor Necrosis Is Associated With Survival and Social Determinants of Health in Patients With Osteosarcoma in the National Cancer Database.

Clin Orthop Relat Res. 2023-3-1

[8]
Challenges of Systemic Therapy Investigations for Bone Sarcomas.

Int J Mol Sci. 2022-3-24

[9]
Genome-wide DNA methylation patterns reveal clinically relevant predictive and prognostic subtypes in human osteosarcoma.

Commun Biol. 2022-3-8

[10]
Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti-PD-1 Therapy.

Cancer Discov. 2022-4-1

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