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sp. nov.,分离自发酵蔬菜泡菜。

sp. nov., isolated from kimchi, a fermented vegetable.

机构信息

Kimchi Functionality Research Group, World Institute of Kimchi, Gwangju 61755, Republic of Korea.

Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2024 Oct;74(10). doi: 10.1099/ijsem.0.006533.

DOI:10.1099/ijsem.0.006533
PMID:39423152
Abstract

The novel strain CBA3628 was isolated from kimchi, a Korean fermented vegetable. CBA3628 is a cocci-shaped, Gram-stain-positive, catalase- and oxidase-negative and facultatively anaerobic bacterium. The results of phylogenetic analysis based on 16S rRNA gene sequencing indicated that CBA3628 represented a member of the genus of the family . CBA3628 has a circular chromosomal genome and three plasmids of 1 864 558 bp (37% DNA G+C content), containing 1,887 genes, 1,762 predicted protein-coding genes, 4 complete rRNA loci and 70 tRNA genes. The cells were non-haemolytic, non-motile and non-spore forming. The optimal growth of CBA3628 occurred at 30 °C, pH 6.0 and with 0-2% (w/v) NaCl. The major polar lipids of CBA3628 were diphosphatidylglycerol and phosphatidylglycerol. The major fatty acids (>10%) of CBA3628 were C, C and C cyclo ω8. CBA3628 contained A3α-type peptidoglycans. CBA3628 was most closely related to subsp. ATCC 8293, subsp. DSM 20484 and DSM 20241 with 99.52% 16S rRNA gene sequence similarity. However, the average nucleotide identities of 91.9%, 91.7% and 91.1% and the digital DNA-DNA hybridisation values of 45.6%, 45.4% and 45.4% indicated that the novel isolate represented a distinct species. Phylogenetic analyses of both the 16S rRNA gene and genome sequences revealed that CBA3628 formed a distinct phylogenetic lineage within the genus and was most closely related to MB7. The ANI and dDDH values between CBA3628 and MB7 were 84.9 and 22.8%, respectively. Functional genes belonging to COG categories E, J and K were enriched in the genome of CBA3628 (>7.9%). On the basis of its physiological, chemotaxonomic, phylogenetic and genomic properties, strain CBA3628 represents a novel species from the genus , for which we propose the name sp. nov., with the type strain CBA3628 (= KACC 23049 = DSM 116836).

摘要

新型菌株 CBA3628 从韩国发酵蔬菜泡菜中分离出来。CBA3628 是一种球形、革兰氏阳性、过氧化氢酶和氧化酶阴性、兼性厌氧菌。基于 16S rRNA 基因测序的系统发育分析结果表明,CBA3628 代表了 属的一个成员。CBA3628 具有一个圆形染色体基因组和三个 1864558bp 的质粒(37% DNA G+C 含量),包含 1887 个基因、1762 个预测蛋白编码基因、4 个完整的 rRNA 基因座和 70 个 tRNA 基因。细胞是非溶血的、非运动的、非孢子形成的。CBA3628 的最佳生长温度为 30°C、pH 值 6.0 和 0-2%(w/v)NaCl。CBA3628 的主要极性脂是双磷脂酰甘油和磷脂酰甘油。CBA3628 的主要脂肪酸(>10%)是 C16:0、C18:1ω7c 和 C18:1ω8c。CBA3628 含有 A3α 型肽聚糖。CBA3628 与 亚种 ATCC 8293、DSM 20484 和 DSM 20241 的 16S rRNA 基因序列相似性最高,为 99.52%。然而,平均核苷酸同一性为 91.9%、91.7%和 91.1%,数字 DNA-DNA 杂交值为 45.6%、45.4%和 45.4%,表明新分离株代表了一个独特的种。16S rRNA 基因和基因组序列的系统发育分析表明,CBA3628 在 属内形成了一个独特的进化枝,与 MB7 最为密切相关。CBA3628 和 MB7 之间的 ANI 和 dDDH 值分别为 84.9%和 22.8%。属于 COG 类别 E、J 和 K 的功能基因在 CBA3628 基因组中富集(>7.9%)。基于其生理、化学分类、系统发育和基因组特性,菌株 CBA3628 代表了 属的一个新种,我们建议将其命名为 sp. nov.,其模式菌株为 CBA3628(=KACC 23049=DSM 116836)。

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