Liu Hsin-Ping, Phoa Frederick Kin Hing, Dutta Saykat
Data Science Degree Program, National Taiwan University, Roosevelt Rd., Taipei, 106, Taiwan.
Institute of Statistical Science, Academia Sinica, Academia Rd., Taipei, 115, Taiwan.
Sci Rep. 2024 Oct 18;14(1):24510. doi: 10.1038/s41598-024-75515-w.
Since the advent of computational analysis and visualization of chemical compounds, Computer-Aided Drug Design has made significant contributions to drug discovery. Recently, de novo drug design and molecular optimization have garnered considerable attention. Traditional optimization methods often struggle with the discrete nature of molecular space, but evolutionary computations have demonstrated their versatility across various optimization problems, regardless of the nature of the objective functions. This paper introduces a novel evolutionary algorithm, the Swarm Intelligence-Based Method for Single-Objective Molecular Optimization. Several experiments were conducted to showcase the efficiency of the proposed method, which identifies near-optimal solutions in a remarkably short time. The results were then compared with those of other state-of-the-art methods in the field.
自化合物的计算分析和可视化出现以来,计算机辅助药物设计对药物发现做出了重大贡献。最近,从头药物设计和分子优化受到了广泛关注。传统的优化方法常常难以应对分子空间的离散性质,但进化计算已证明其在各种优化问题中的通用性,无论目标函数的性质如何。本文介绍了一种新颖的进化算法,即基于群体智能的单目标分子优化方法。进行了多项实验以展示所提方法的效率,该方法能在极短时间内识别出接近最优的解。然后将结果与该领域其他先进方法的结果进行了比较。