• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

量化药物的化学美感。

Quantifying the chemical beauty of drugs.

机构信息

Division of Biological Chemistry and Drug Discovery, College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.

出版信息

Nat Chem. 2012 Jan 24;4(2):90-8. doi: 10.1038/nchem.1243.

DOI:10.1038/nchem.1243
PMID:22270643
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3524573/
Abstract

Drug-likeness is a key consideration when selecting compounds during the early stages of drug discovery. However, evaluation of drug-likeness in absolute terms does not reflect adequately the whole spectrum of compound quality. More worryingly, widely used rules may inadvertently foster undesirable molecular property inflation as they permit the encroachment of rule-compliant compounds towards their boundaries. We propose a measure of drug-likeness based on the concept of desirability called the quantitative estimate of drug-likeness (QED). The empirical rationale of QED reflects the underlying distribution of molecular properties. QED is intuitive, transparent, straightforward to implement in many practical settings and allows compounds to be ranked by their relative merit. We extended the utility of QED by applying it to the problem of molecular target druggability assessment by prioritizing a large set of published bioactive compounds. The measure may also capture the abstract notion of aesthetics in medicinal chemistry.

摘要

当在药物发现的早期阶段选择化合物时,类药性是一个关键的考虑因素。然而,绝对意义上的类药性评估并不能充分反映化合物质量的全貌。更令人担忧的是,广泛使用的规则可能会无意中助长不良的分子性质膨胀,因为它们允许符合规则的化合物侵犯其边界。我们提出了一种基于可接受性概念的类药性度量方法,称为类药性定量估计(QED)。QED 的经验原理反映了分子性质的基础分布。QED 直观、透明、在许多实际环境中易于实现,并允许根据相对优点对化合物进行排序。我们通过将其应用于通过优先考虑一大组已发表的生物活性化合物来评估分子靶标可药性的问题,扩展了 QED 的实用性。该度量方法还可以捕捉药物化学中美学的抽象概念。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/71e08b2554b0/emss-50746-f0015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/d975dab76e47/emss-50746-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/067ff4340a21/emss-50746-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/d5dc95333d35/emss-50746-f0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/71e08b2554b0/emss-50746-f0015.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/d975dab76e47/emss-50746-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/067ff4340a21/emss-50746-f0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/d5dc95333d35/emss-50746-f0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95f1/3524573/71e08b2554b0/emss-50746-f0015.jpg

相似文献

1
Quantifying the chemical beauty of drugs.量化药物的化学美感。
Nat Chem. 2012 Jan 24;4(2):90-8. doi: 10.1038/nchem.1243.
2
DrugMetric: quantitative drug-likeness scoring based on chemical space distance.DrugMetric:基于化学空间距离的定量类药性评分。
Brief Bioinform. 2024 May 23;25(4). doi: 10.1093/bib/bbae321.
3
Quantitative Estimate Index for Early-Stage Screening of Compounds Targeting Protein-Protein Interactions.定量估计指数用于针对蛋白质-蛋白质相互作用的化合物的早期筛选。
Int J Mol Sci. 2021 Oct 10;22(20):10925. doi: 10.3390/ijms222010925.
4
Drug-likeness and increased hydrophobicity of commercially available compound libraries for drug screening.用于药物筛选的市售化合物库的类药性和疏水性增加。
Curr Top Med Chem. 2012;12(14):1500-13. doi: 10.2174/156802612802652466.
5
Not Drug-like, but Like Drugs: Cnidaria Natural Products.不像药物,却胜似药物:刺胞动物天然产物。
Mar Drugs. 2021 Dec 30;20(1):42. doi: 10.3390/md20010042.
6
The application of in silico drug-likeness predictions in pharmaceutical research.计算机药物相似性预测在药物研究中的应用。
Adv Drug Deliv Rev. 2015 Jun 23;86:2-10. doi: 10.1016/j.addr.2015.01.009. Epub 2015 Feb 7.
7
Considering the impact drug-like properties have on the chance of success.考虑到类药性对成功机会的影响。
Drug Discov Today. 2013 Jul;18(13-14):659-66. doi: 10.1016/j.drudis.2013.02.008. Epub 2013 Feb 28.
8
How drug-like are 'ugly' drugs: do drug-likeness metrics predict ADME behaviour in humans?“难看”的药物与药物特性有多相似:药物特性指标能否预测人体中的药物代谢及药代动力学行为?
Drug Discov Today. 2014 Apr;19(4):489-95. doi: 10.1016/j.drudis.2014.01.007. Epub 2014 Jan 21.
9
Scopy: an integrated negative design python library for desirable HTS/VS database design.Scopy:一个集成的负设计 Python 库,用于设计理想的高通量筛选/虚拟筛选数据库。
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa194.
10
Development of a method for evaluating drug-likeness and ease of synthesis using a data set in which compounds are assigned scores based on chemists' intuition.开发一种使用数据集评估药物相似性和合成难易程度的方法,在该数据集中,化合物根据化学家的直觉被赋予分数。
J Chem Inf Comput Sci. 2003 Jul-Aug;43(4):1269-75. doi: 10.1021/ci034043l.

引用本文的文献

1
Optimizing blood-brain barrier permeability in KRAS inhibitors: A structure-constrained molecular generation approach.优化KRAS抑制剂的血脑屏障通透性:一种结构受限的分子生成方法。
J Pharm Anal. 2025 Aug;15(8):101337. doi: 10.1016/j.jpha.2025.101337. Epub 2025 May 9.
2
Alphappimi: a comprehensive deep learning framework for predicting PPI-modulator interactions.Alphappimi:用于预测蛋白质-蛋白质相互作用调节剂相互作用的综合深度学习框架。
J Cheminform. 2025 Aug 29;17(1):134. doi: 10.1186/s13321-025-01077-2.
3
A genome-scale drug discovery pipeline uncovers therapeutic targets and a unique p97 allosteric binding site in .

本文引用的文献

1
Moving beyond rules: the development of a central nervous system multiparameter optimization (CNS MPO) approach to enable alignment of druglike properties.超越规则:中枢神经系统多参数优化 (CNS MPO) 方法的开发,以实现类似药物特性的一致性。
ACS Chem Neurosci. 2010 Jun 16;1(6):435-49. doi: 10.1021/cn100008c. Epub 2010 Mar 25.
2
Defining desirable central nervous system drug space through the alignment of molecular properties, in vitro ADME, and safety attributes.通过分子特性、体外 ADME 和安全性特征的一致性来定义理想的中枢神经系统药物空间。
ACS Chem Neurosci. 2010 Jun 16;1(6):420-34. doi: 10.1021/cn100007x. Epub 2010 Mar 25.
3
一个全基因组规模的药物发现流程揭示了治疗靶点以及(此处文本不完整,缺少具体所指内容中的)一个独特的p97变构结合位点。
Proc Natl Acad Sci U S A. 2025 Sep 2;122(35):e2505710122. doi: 10.1073/pnas.2505710122. Epub 2025 Aug 29.
4
Chlorogenic Acid and Cinnamaldehyde in Breast Cancer Cells: Predictive Examination of Pharmacokinetics and Binding Thermodynamics with the Key Mediators of PI3K/Akt Signaling.乳腺癌细胞中的绿原酸和肉桂醛:与PI3K/Akt信号关键介质的药代动力学及结合热力学预测性研究
Biomedicines. 2025 Jul 24;13(8):1810. doi: 10.3390/biomedicines13081810.
5
Unlocking the antimalarial potential of novel steroid-tetraoxane hybrids through consensus molecular docking and molecular dynamics investigation.通过共识分子对接和分子动力学研究揭示新型甾体-四氧杂环乙烷杂化物的抗疟潜力。
Sci Rep. 2025 Aug 19;15(1):30389. doi: 10.1038/s41598-025-13017-z.
6
Design and optimization of novel succinate dehydrogenase inhibitors against agricultural fungi based on transformer model.基于Transformer模型的新型抗农业真菌琥珀酸脱氢酶抑制剂的设计与优化
Mol Divers. 2025 Aug 19. doi: 10.1007/s11030-025-11323-2.
7
Substituted 1,4-naphthoquinones for potential anticancer therapeutics: cytotoxic effects and QSAR-guided design of new analogs.用于潜在抗癌治疗的取代1,4-萘醌:细胞毒性作用及新类似物的QSAR导向设计
Comput Struct Biotechnol J. 2025 Jul 25;27:3492-3509. doi: 10.1016/j.csbj.2025.07.040. eCollection 2025.
8
Computationally accelerated identification of P-glycoprotein inhibitors.P-糖蛋白抑制剂的计算加速鉴定
PLoS One. 2025 Aug 13;20(8):e0325121. doi: 10.1371/journal.pone.0325121. eCollection 2025.
9
MGMG: Cell Morphology-Guided Molecule Generation for Drug Discovery.MGMG:用于药物发现的细胞形态学引导分子生成
bioRxiv. 2025 Jul 17:2025.07.11.664424. doi: 10.1101/2025.07.11.664424.
10
Cryo-EM ligand building using AlphaFold3-like model and molecular dynamics.使用类似AlphaFold3的模型和分子动力学进行冷冻电镜配体构建。
PLoS Comput Biol. 2025 Aug 11;21(8):e1013367. doi: 10.1371/journal.pcbi.1013367. eCollection 2025 Aug.
Strategies to improve in vivo toxicology outcomes for basic candidate drug molecules.
提高基础候选药物分子体内毒理学结果的策略。
Bioorg Med Chem Lett. 2011 Oct 1;21(19):5673-9. doi: 10.1016/j.bmcl.2011.07.074. Epub 2011 Jul 27.
4
Analysis of in vitro bioactivity data extracted from drug discovery literature and patents: Ranking 1654 human protein targets by assayed compounds and molecular scaffolds.从药物发现文献和专利中提取的体外生物活性数据的分析:根据测定化合物和分子支架对 1654 个人类蛋白靶标进行排名。
J Cheminform. 2011 May 13;3(1):14. doi: 10.1186/1758-2946-3-14.
5
Probing the links between in vitro potency, ADMET and physicochemical parameters.探究体外效力、ADMET 和理化参数之间的联系。
Nat Rev Drug Discov. 2011 Mar;10(3):197-208. doi: 10.1038/nrd3367.
6
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs.药物银行3.0:药物“组学”研究的综合资源。
Nucleic Acids Res. 2011 Jan;39(Database issue):D1035-41. doi: 10.1093/nar/gkq1126. Epub 2010 Nov 8.
7
How desirable are your IC50s? A way to enhance screening-based decision making.你的半数抑制浓度(IC50)数值有多理想?一种增强基于筛选的决策制定的方法。
J Biomol Screen. 2010 Dec;15(10):1183-93. doi: 10.1177/1087057110384402. Epub 2010 Oct 27.
8
Understanding and predicting druggability. A high-throughput method for detection of drug binding sites.理解和预测药物可开发性。一种用于检测药物结合部位的高通量方法。
J Med Chem. 2010 Aug 12;53(15):5858-67. doi: 10.1021/jm100574m.
9
Are there differences between launched drugs, clinical candidates, and commercially available compounds?已上市药物、临床候选药物和市售化合物之间是否存在差异?
J Chem Inf Model. 2010 May 24;50(5):815-21. doi: 10.1021/ci100023s.
10
Evaluation of pKa estimation methods on 211 druglike compounds.评价 211 个类药性化合物的 pKa 估算方法。
J Chem Inf Model. 2010 Apr 26;50(4):565-71. doi: 10.1021/ci100019p.