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利用 DAMD 分子标记评估巴勒斯坦红花(Carthamus tinctorius L.)的遗传多样性。

Genetic diversity assessment of Palestinian safflower (Carthamus tinctorius L.) utilizing DAMD molecular markers.

机构信息

Department of Agricultural Biotechnology, Faculty of Agricultural Sciences and Technology, Palestine Technical University-Kadoorie, P.O.Box: 7, Tulkarm, Palestine.

出版信息

Biotechnol Lett. 2024 Dec;46(6):1293-1302. doi: 10.1007/s10529-024-03538-4. Epub 2024 Oct 19.

Abstract

The current knowledge about Palestinian safflower landraces is relatively limited in terms of phenotypic and molecular characterization, however, the purpose of this investigation was to determine the amount of genetic diversity in eighteen local safflower landraces using seven DAMD markers. The banding patterns for each primer were scored and compiled into a data matrix. Subsequently, the data matrix was analyzed using UPGMA cluster analysis to identify distinct genetic groups among the landraces. In total, 88 DNA fragments were found, and there were an average of 12.6 loci per assay unit observed. Resolving Power (RP) revealed an average of 7.09 was determined, with the highest RP value at 13.3. The dendrogram obtained from DAMD data divided the landraces into three main clusters, denoted as I, II and III. The first cluster (I) consisted of one genotype (PTUK.SA16). The second cluster (II) consisted of two genotypes (PTUK.SA13 and PTUK.SA10). The third cluster (III) was later partitioned into two distinct sub-clusters, which are III.a and III.b. Sub-cluster III.a comprised seven genotypes (PTUK.SA4, PTUK.SA9, PTUK.SA8, PTUK.SA7, PTUK.SA6, PTUK.SA5 and PTUK.SA3). While Sub-cluster III.b consisted of eight genotypes (PTUK.SA15, PTUK.SA18, PTUK.SA17, PTUK.SA14, PTUK.SA12, PTUK.SA2, PTUK.SA11, and PTUK.SA1). This research assess the genetic diversity of Palestinian safflower landraces using PCR-based DAMD markers. The remarkable level of polymorphism detected using DAMD markers demonstrated their effectiveness in distinguishing between Palestinian safflower genotypes.

摘要

目前关于巴勒斯坦红花地方品种的知识在表型和分子特征方面相对有限,然而,本研究的目的是使用 7 个 DAMD 标记来确定 18 个当地红花地方品种的遗传多样性程度。每个引物的带型被评分并编制成一个数据矩阵。随后,使用 UPGMA 聚类分析对数据矩阵进行分析,以确定品种之间的不同遗传群体。总共发现了 88 个 DNA 片段,每个检测单位的平均观察到 12.6 个位点。分辨力(RP)显示平均为 7.09,最高 RP 值为 13.3。从 DAMD 数据获得的系统发育树将品种分为三个主要类群,分别表示为 I、II 和 III。第一类群(I)由一个基因型(PTUK.SA16)组成。第二类群(II)由两个基因型(PTUK.SA13 和 PTUK.SA10)组成。第三类群(III)后来分为两个不同的亚群,即 III.a 和 III.b。亚群 III.a 由七个基因型(PTUK.SA4、PTUK.SA9、PTUK.SA8、PTUK.SA7、PTUK.SA6、PTUK.SA5 和 PTUK.SA3)组成。而亚群 III.b 由八个基因型(PTUK.SA15、PTUK.SA18、PTUK.SA17、PTUK.SA14、PTUK.SA12、PTUK.SA2、PTUK.SA11 和 PTUK.SA1)组成。本研究使用基于 PCR 的 DAMD 标记评估巴勒斯坦红花地方品种的遗传多样性。使用 DAMD 标记检测到的显著多态性水平表明它们在区分巴勒斯坦红花基因型方面的有效性。

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