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(鞘翅目:四节叶甲科)的完整线粒体基因组及其系统发育意义

The Complete Mitochondrial Genomes of (Coleoptera: Tetratomidae) with Its Phylogenetic Implications.

作者信息

Ouyang Bowen, Li Yingying, Wang Jieqiong, Wei Zhonghua, Shi Aimin

机构信息

College of Life Sciences, China West Normal University, Nanchong 637009, China.

出版信息

Curr Issues Mol Biol. 2024 Sep 26;46(10):10795-10805. doi: 10.3390/cimb46100641.

Abstract

To explore the mitogenome characteristics of Tetratomidae and the phylogenetic position of this family in Tenebrionoidea, the mitogenome of Mařan, 1940 was sequenced, annotated, and analyzed. The mitogenome is consistent with Tenebrionoidea species in gene length, genomic organization, codon usage, and secondary structures of transfer genes (tRNAs). Most protein-coding genes (PCGs) originate with a typical ATN start codon, except and which start with TTG. In total, 10 PCGs are terminated with complete stop codon TAA and TAG, while , , and contain an incomplete stop codon T-. Among the 13 PCGs, (Pi = 0.282) has the most diverse nucleotide composition, and is the most conserved gene with the lowest value (Pi = 0.154). The Ka/Ks ratio of (0.076) and (0.124) has a lower value. All the tRNAs can be folded in a typical clover-leaf secondary structure, except , which lacked a dihydrouridine arm. And phylogenetic analyses were performed based on 13 PCGs using the Bayesian inference (BI) method. The results showed that the clade of Tenebrionoidea was well separated from the outgroups, and Tetratomidae and Mycetophagidae were not well resolved. Phylogenetic analyses with more mitogenome samplings are needed to resolve the phylogeny of Tenebrionoidea.

摘要

为了探究拟天牛科的线粒体基因组特征及其在拟步甲总科中的系统发育位置,对1940年的马氏拟天牛线粒体基因组进行了测序、注释和分析。该线粒体基因组在基因长度、基因组组织、密码子使用以及转运基因(tRNA)的二级结构方面与拟步甲总科的物种一致。大多数蛋白质编码基因(PCG)以典型的ATN起始密码子开始,除了 和 以TTG起始。总共有10个PCG以完整的终止密码子TAA和TAG结束,而 、 和 含有不完整的终止密码子T - 。在13个PCG中, (Pi = 0.282)具有最多样化的核苷酸组成,而 是最保守的基因,其值最低(Pi = 0.154)。 (0.076)和 (0.124)的Ka/Ks比值较低。除了 缺少二氢尿嘧啶臂外,所有tRNA都可以折叠成典型的三叶草二级结构。并使用贝叶斯推断(BI)方法基于13个PCG进行了系统发育分析。结果表明,拟步甲总科的分支与外类群分得很开,而拟天牛科和菌食甲科没有得到很好的解析。需要更多线粒体基因组样本进行系统发育分析以解决拟步甲总科的系统发育问题。

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