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隐翅虫科(鞘翅目,扁甲总科)首个完整线粒体基因组:基因组描述及系统发育意义

First Complete Mitochondrial Genome of Melyridae (Coleoptera, Cleroidea): Genome Description and Phylogenetic Implications.

作者信息

Yuan Lilan, Ge Xueying, Xie Guanglin, Liu Haoyu, Yang Yuxia

机构信息

The Key Laboratory of Zoological Systematics and Application, School of Life Science, Institute of Life Science and Green Development, Hebei University, Baoding 071002, China.

College of Agriculture, Yangtze University, Jingzhou 434025, China.

出版信息

Insects. 2021 Jan 20;12(2):87. doi: 10.3390/insects12020087.

Abstract

To explore the characteristics of the mitogenome of Melyridae and reveal phylogenetic relationships, the mitogenome of sp. was sequenced and annotated. This is the first time a complete mitochondrial genome has beengenerated in this family. Consistent with previous observations of Cleroidea species, the mitogenome of sp. is highly conserved in gene size, organization and codon usage, and secondary structures oftRNAs. All protein-coding genes(PCGs) initiate withthe standard start codon ATN,except ND1, which starts with TTG, and terminate with the complete stop codons of TAA and TAG, or incomplete forms, TA- and T-. MosttRNAs have the typical clover-leaf structure, except trnS1 (Ser, AGN), whose dihydrouridine (DHU) armis reduced. In the A+T-rich region, three types of tandem repeat sequence units are found, including a 115 bp sequence tandemly repeated twice, a 16 bp sequence tandemly repeated three timeswith a partial third repeat and a 10 bp sequence tandemly repeated seven times. Phylogenetic analyses based on 13 protein-coding genes by both Bayesian inference (BI) and maximum likelihood (ML) methods suggest that Melyridae is polyphyletic, and Dasytinae and Malchiinae are supported as independent families.

摘要

为了探究拟花萤科线粒体基因组的特征并揭示系统发育关系,对某拟花萤属物种的线粒体基因组进行了测序和注释。这是首次在该科中获得完整的线粒体基因组。与之前对扁甲总科物种的观察结果一致,该拟花萤属物种的线粒体基因组在基因大小、组织、密码子使用以及tRNA的二级结构方面高度保守。所有蛋白质编码基因(PCGs)均以标准起始密码子ATN起始,但ND1基因以TTG起始,并且以TAA和TAG的完整终止密码子或不完全形式TA-和T-终止。大多数tRNA具有典型的三叶草结构,但trnS1(Ser,AGN)的二氢尿嘧啶(DHU)臂有所缩短。在富含A+T的区域,发现了三种串联重复序列单元,包括一个115 bp的序列串联重复两次、一个16 bp的序列串联重复三次且第三次部分重复以及一个10 bp的序列串联重复七次。基于13个蛋白质编码基因通过贝叶斯推断(BI)和最大似然(ML)方法进行的系统发育分析表明,拟花萤科是多系的,并且支持瘤花萤亚科和毛花萤亚科作为独立的科。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65bb/7909412/2763cca17a6b/insects-12-00087-g001.jpg

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