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sp.nov.,一种从猕猴桃树根际土壤中分离得到的新型细菌。

sp.nov., a novel bacterium isolated from kiwi tree rhizosphere soil.

机构信息

Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, School of Light Industry, Beijing Technology and Business University, Beijing, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Oct;74(10). doi: 10.1099/ijsem.0.006529.

Abstract

Strain M09 was isolated from the rhizoshere of kiwi fruit trees from an orchard located in Fangshan, Beijing, PR China (39° 49' 25.1″ N, 116° 4' 44.5″ E,). It is a short rod-shaped, Gram-stain-negative, facultatively anaerobic bacterium that tests positive for both oxidase and catalase. The strain exhibited growth within the temperature range of 15-45 °C (optimal growth at 30 °C) and the pH range of 4.0-10.0 (optimal growth at pH 7.0) and without NaCl. It also grew in a sodium chloride-free nutrient agar (NA) medium. The results of phylogenetic analysis of the 16S rRNA gene sequences indicated that M09 represents a member of the genus and shares high similarity with S8-55 (98.46%) and 011410 (97.58%). The average nucleotide identity values between M09 and S8-55, 011410, X HP0099 and MVW-1 were 95.56, 84.51, 79.83 and 83.68%, respectively. The digital DNA-DNA hybridisation values between between M09 and S8-55, 011410, X HP0099 and MVW-1 were 56.40, 29.30, 21.60 and 28.60%, respectively. The major fatty acids identified were C 3-OH (51.8%) and Cω7 (35.5%). The major respiratory quinone was Q-10, with Q-8 present as a minor component. Polar lipids were mainly comprised of diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylcholine (PC), and phosphatidylethanolamine (PE). Genome sequencing revealed that the strain has a DNA G+C content of 64.31 mol%. On the basis of this comprehensive taxonomic characterisation data, M09 represents a novel species within the genus and has been named sp. nov. The type strain is designated as M09 (=GDMCC 1.4157=KCTC 8143).

摘要

M09 菌株从中国北京房山区一个果园的猕猴桃根际中分离得到(39°49'25.1″N,116°4'44.5″E)。它是一个短的杆状、革兰氏阴性、兼性厌氧细菌,氧化酶和过氧化氢酶均为阳性。该菌株在 15-45°C 的温度范围内和 pH 值为 4.0-10.0 的范围内生长(最佳生长温度为 pH 7.0),并且不含 NaCl。它也可以在无氯化钠的营养琼脂(NA)培养基中生长。16S rRNA 基因序列的系统发育分析结果表明,M09 代表一个属的成员,与 S8-55(98.46%)和 011410(97.58%)高度相似。M09 与 S8-55、011410、X HP0099 和 MVW-1 的平均核苷酸同一性值分别为 95.56、84.51、79.83 和 83.68%。M09 与 S8-55、011410、X HP0099 和 MVW-1 之间的数字 DNA-DNA 杂交值分别为 56.40、29.30、21.60 和 28.60%。鉴定的主要脂肪酸为 C 3-OH(51.8%)和 Cω7(35.5%)。主要呼吸醌为 Q-10,Q-8 为次要成分。极性脂主要由二磷脂酰甘油(DPG)、磷脂酰甘油(PG)、磷脂酰胆碱(PC)和磷脂酰乙醇胺(PE)组成。基因组测序显示该菌株的 DNA G+C 含量为 64.31 mol%。基于这些全面的分类特征数据,M09 代表了属内的一个新种,并被命名为 sp. nov. 。该模式菌株被指定为 M09(=GDMCC 1.4157=KCTC 8143)。

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