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通过全基因组测序对波兰即食食品中分离出的菌群进行特征分析。

Characterization of the Group Isolated from Ready-to-Eat Foods in Poland by Whole-Genome Sequencing.

作者信息

Kowalska Joanna, Maćkiw Elżbieta, Korsak Dorota, Postupolski Jacek

机构信息

National Institute of Public Health NIH-National Research Institute, Department of Food Safety, Laboratory of Food Microbiology, 00-791 Warsaw, Poland.

出版信息

Foods. 2024 Oct 14;13(20):3266. doi: 10.3390/foods13203266.

Abstract

can contaminate food and cause food poisoning by producing toxins such as cereulide, toxin BL, and cytotoxin K. In this study, we retrospectively analyzed from retail food products and food poisoning cases using PCR methods to determine their virulence profiles. A new toxin profile, encoding all four toxins (, , , ), was found in 0.4% of isolates. The toxin profiles, classified into A-J, revealed that 91.8% harbored genes, while , , and were detected in 43.8%, 46.9%, and 4.2% of isolates, respectively. Whole-genome sequencing (WGS) identified four distinct species within the group, with 21 isolates closely related to , 25 to , 2 to , and 1 to . Three novel sequence types (STs 3297, 3298, 3299) were discovered. Antibiotic resistance genes were common, with 100% of isolates carrying beta-lactam resistance genes. Fosfomycin (80%), vancomycin (8%), streptothricin (6%), tetracycline (4%), and macrolide resistance (2%) genes were also detected. These results highlight the genetic diversity and antibiotic resistance potential of strains in Polish food products.

摘要

可污染食物并通过产生如蜡样芽胞杆菌溶血素、毒素BL和细胞毒素K等毒素导致食物中毒。在本研究中,我们采用聚合酶链反应(PCR)方法对零售食品和食物中毒病例进行回顾性分析,以确定它们的毒力谱。在0.4%的分离株中发现了一种编码所有四种毒素(、、、)的新毒素谱。毒素谱分为A - J类,结果显示91.8%的分离株携带基因,而、和分别在43.8%、46.9%和4.2%的分离株中被检测到。全基因组测序(WGS)在蜡样芽胞杆菌组内鉴定出四个不同的物种,其中21株分离株与密切相关,25株与相关,2株与相关,1株与相关。发现了三种新的序列类型(ST3297、ST3298、ST3299)。抗生素抗性基因普遍存在,100%的分离株携带β-内酰胺抗性基因。还检测到了磷霉素(80%)、万古霉素(8%)、链丝菌素(6%)、四环素(4%)和大环内酯抗性(2%)基因。这些结果突出了波兰食品中蜡样芽胞杆菌菌株的遗传多样性和抗生素抗性潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e12/11506886/3cb92902f591/foods-13-03266-g001.jpg

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