• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过转录组学和代谢组学分析揭示愈伤组织中棕色化的分子机制。

Unveiling the Molecular Mechanisms of Browning in Callus through Transcriptomic and Metabolomic Analysis.

机构信息

Hainan Key Laboratory of Tropical Oil Crops Biology, Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China.

Institute of Scientific and Technical Information, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.

出版信息

Int J Mol Sci. 2024 Oct 14;25(20):11021. doi: 10.3390/ijms252011021.

DOI:10.3390/ijms252011021
PMID:39456802
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11507271/
Abstract

is one of the camellia plants distributed in tropical regions, and its regeneration system and genetic transformation are affected by callus browning. However, the underlying mechanism of callus browning formation remains largely unknown. To investigate the metabolic basis and molecular mechanism of the callus browning of , histological staining, high-throughput metabolomics, and transcriptomic assays were performed on calli with different browning degrees (T1, T2, and T3). The results of histological staining revealed that the brown callus cells had obvious lignification and accumulation of polyphenols. Widely targeted metabolomics revealed 1190 differentially accumulated metabolites (DAMs), with 53 DAMs annotated as phenylpropanoids and flavonoids. Comparative transcriptomics revealed differentially expressed genes (DEGs) of the T2 vs. T1 associated with the biosynthesis and regulation of flavonoids and transcription factors in . Among them, forty-four enzyme genes associated with flavonoid biosynthesis were identified, including (), (), via (), (), (), (), (), (), (), (), and (). Related transcription factors , (), and genes also presented different expression patterns in T2 vs. T1. These results indicate that the browning of calli in is regulated at both the transcriptional and metabolic levels. The oxidation of flavonoids and the regulation of related structural genes and transcription factors are crucial decisive factors. This study preliminarily revealed the molecular mechanism of the browning of the callus of Camellia hainanensis, and the results can provide a reference for the anti-browning culture of callus.

摘要

是一种分布在热带地区的山茶植物,其再生系统和遗传转化受到愈伤组织褐变的影响。然而,愈伤组织褐变形成的潜在机制在很大程度上仍然未知。为了研究 愈伤组织褐变的代谢基础和分子机制,对褐变程度不同的愈伤组织(T1、T2 和 T3)进行了组织学染色、高通量代谢组学和转录组学分析。组织学染色的结果表明,褐色愈伤组织细胞有明显的木质化和多酚积累。广泛靶向代谢组学揭示了 1190 个差异积累代谢物(DAMs),其中 53 个 DAMs 被注释为苯丙烷类和类黄酮。比较转录组学揭示了 T2 与 T1 相关的差异表达基因(DEGs)与类黄酮的生物合成和调节以及 中的转录因子有关。其中,鉴定了 44 个与类黄酮生物合成相关的酶基因,包括 ()、 ()、 ()通过 ()、 ()、 ()、 ()、 ()、 ()、 ()和 ()。相关转录因子 ()、 ()和 基因在 T2 与 T1 中的表达模式也不同。这些结果表明, 愈伤组织的褐变受转录和代谢水平的调节。类黄酮的氧化和相关结构基因和转录因子的调节是关键的决定性因素。本研究初步揭示了 愈伤组织褐变的分子机制,研究结果可为 愈伤组织的抗褐变培养提供参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/2bcae3049929/ijms-25-11021-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/d42d9eecb38f/ijms-25-11021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/737a39d916ec/ijms-25-11021-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/d697e36d8001/ijms-25-11021-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/51bcc13c7c95/ijms-25-11021-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/5df1753cd242/ijms-25-11021-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/ade95bea4278/ijms-25-11021-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/2bcae3049929/ijms-25-11021-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/d42d9eecb38f/ijms-25-11021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/737a39d916ec/ijms-25-11021-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/d697e36d8001/ijms-25-11021-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/51bcc13c7c95/ijms-25-11021-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/5df1753cd242/ijms-25-11021-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/ade95bea4278/ijms-25-11021-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcbe/11507271/2bcae3049929/ijms-25-11021-g007.jpg

相似文献

1
Unveiling the Molecular Mechanisms of Browning in Callus through Transcriptomic and Metabolomic Analysis.通过转录组学和代谢组学分析揭示愈伤组织中棕色化的分子机制。
Int J Mol Sci. 2024 Oct 14;25(20):11021. doi: 10.3390/ijms252011021.
2
Integrated transcriptomic and metabolomic analyses elucidate the mechanism of flavonoid biosynthesis in the regulation of mulberry seed germination under salt stress.综合转录组学和代谢组学分析阐明了黄酮类生物合成在调控盐胁迫下桑椹种子萌发中的作用机制。
BMC Plant Biol. 2024 Feb 21;24(1):132. doi: 10.1186/s12870-024-04804-3.
3
Integrated Metabolomics and Transcriptomics Analysis of Flavonoid Biosynthesis Pathway in Hua.黄花蒿黄酮类生物合成途径的代谢组学和转录组学综合分析
Molecules. 2024 May 10;29(10):2248. doi: 10.3390/molecules29102248.
4
The Effects of Ultraviolet A/B Treatments on Anthocyanin Accumulation and Gene Expression in Dark-Purple Tea Cultivar 'Ziyan' ().紫外光 A/B 处理对深紫色茶叶品种“紫阳”()中花色素苷积累和基因表达的影响。
Molecules. 2020 Jan 15;25(2):354. doi: 10.3390/molecules25020354.
5
Metabolite profiling and screening of callus browning-related genes in lotus (Nelumbo nucifera).莲(Nelumbo nucifera)愈伤组织褐化相关基因的代谢物谱分析与筛选
Physiol Plant. 2023 Sep-Oct;175(5):e14027. doi: 10.1111/ppl.14027.
6
Combined Metabolomics and Transcriptomics Analysis of the Distribution of Flavonoids in the Fibrous Root and Taproot of Coll.et Hemsl.结合代谢组学和转录组学分析川牛膝纤维根和主根中类黄酮的分布
Genes (Basel). 2024 Jun 22;15(7):828. doi: 10.3390/genes15070828.
7
Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading.代谢物分析和转录组分析表明,UVR8 介导的信号转导途径在调节茶树(Camellia sinensis)对遮荫的响应中类黄酮生物合成中起重要作用。
BMC Plant Biol. 2018 Oct 12;18(1):233. doi: 10.1186/s12870-018-1440-0.
8
De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar 'Tieguanyin' compared with cultivar 'Benshan'.从头转录组和植物化学分析揭示了原始乌龙茶(Camellia sinensis)品种“铁观音”与品种“本山”相比差异表达的基因和特征次生代谢产物。
BMC Genomics. 2019 Apr 3;20(1):265. doi: 10.1186/s12864-019-5643-z.
9
An in-depth study of anthocyanin synthesis in the exocarp of virescens and nigrescens oil palm: metabolomic and transcriptomic analysis.深入研究油棕外果皮中花色苷的合成:代谢组学和转录组学分析。
BMC Plant Biol. 2024 Sep 30;24(1):910. doi: 10.1186/s12870-024-05607-2.
10
Integrated transcriptomic and metabolomic analyses reveals anthocyanin biosynthesis in leaf coloration of quinoa (Chenopodium quinoa Willd.).综合转录组学和代谢组学分析揭示了藜(Chenopodium quinoa Willd.)叶片颜色中花色苷生物合成的机制。
BMC Plant Biol. 2024 Mar 20;24(1):203. doi: 10.1186/s12870-024-04821-2.

引用本文的文献

1
Integrative Analysis of Transcriptomic and Metabolomic Profiles Uncovers the Mechanism of Color Variation in the Tea Plant Callus.转录组和代谢组谱的综合分析揭示茶树愈伤组织颜色变异的机制
Plants (Basel). 2025 May 13;14(10):1454. doi: 10.3390/plants14101454.
2
Integrated metabolomic and transcriptomic analysis provides insights into the browning of walnut endocarps.整合代谢组学和转录组学分析为核桃内果皮褐变提供了见解。
Front Plant Sci. 2025 May 9;16:1582209. doi: 10.3389/fpls.2025.1582209. eCollection 2025.
3
Influence of Exogenous Melatonin on the Physiological Traits of Seedlings Under Polyethylene Glycol-Induced Drought Stress.

本文引用的文献

1
The complex hexaploid oil-Camellia genome traces back its phylogenomic history and multi-omics analysis of Camellia oil biosynthesis.复杂的六倍体油茶基因组追溯了其系统发育史和油茶生物合成的多组学分析。
Plant Biotechnol J. 2024 Oct;22(10):2890-2906. doi: 10.1111/pbi.14412. Epub 2024 Jun 24.
2
Study on the causes of changes in colour during Hibiscus syriacus flowering based on transcriptome and metabolome analyses.基于转录组和代谢组分析的木槿花颜色变化原因研究。
BMC Plant Biol. 2024 May 21;24(1):431. doi: 10.1186/s12870-024-05142-0.
3
Influence of Bagging on Fruit Quality, Incidence of Peel Browning Spots, and Lignin Content of 'Huangguan' Pears.
外源褪黑素对聚乙二醇诱导干旱胁迫下幼苗生理特性的影响
Plants (Basel). 2025 Feb 22;14(5):676. doi: 10.3390/plants14050676.
4
Integrated Metabolomic and Transcriptomic Analyses Reveal the Potential Molecular Mechanism Underlying Callus Browning in .综合代谢组学和转录组学分析揭示了……中愈伤组织褐变潜在的分子机制。 (原文句末不完整)
Plants (Basel). 2025 Feb 12;14(4):560. doi: 10.3390/plants14040560.
5
Characteristics of Callus and Cell Suspension Cultures of Highbush Blueberry ( L.) Cultivated in the Presence of Different Concentrations of 2,4-D and BAP in a Nutrient Medium.在添加不同浓度2,4 - 二氯苯氧乙酸(2,4 - D)和苄氨基嘌呤(BAP)的营养培养基中培养的高丛蓝莓愈伤组织和细胞悬浮培养物的特性
Plants (Basel). 2024 Nov 22;13(23):3279. doi: 10.3390/plants13233279.
套袋对‘皇冠’梨果实品质、果皮褐斑发生率及木质素含量的影响
Plants (Basel). 2024 Feb 13;13(4):516. doi: 10.3390/plants13040516.
4
Genetic and Transcriptome Analyses of Callus Browning in Chaling Common Wild Rice ( Griff.).《茶陵普通野生稻愈伤组织褐变的遗传与转录组分析》
Genes (Basel). 2023 Nov 27;14(12):2138. doi: 10.3390/genes14122138.
5
Phenolic Acids and Flavonoids Play Important Roles in Flower Bud Differentiation in : Transcriptomics and Metabolomics.酚酸和类黄酮在 : 转录组学和代谢组学中的花芽分化中发挥重要作用。
Int J Mol Sci. 2023 Nov 21;24(23):16550. doi: 10.3390/ijms242316550.
6
Metabolite profiling and screening of callus browning-related genes in lotus (Nelumbo nucifera).莲(Nelumbo nucifera)愈伤组织褐化相关基因的代谢物谱分析与筛选
Physiol Plant. 2023 Sep-Oct;175(5):e14027. doi: 10.1111/ppl.14027.
7
Elicitation with hydrogen peroxide promotes growth, phenolic-enrichment, antioxidant activity and nutritional values of two hydroponic lettuce genotypes.用过氧化氢诱导可促进两种水培生菜基因型的生长、酚类物质富集、抗氧化活性及营养价值。
Food Chem X. 2023 Aug 19;19:100847. doi: 10.1016/j.fochx.2023.100847. eCollection 2023 Oct 30.
8
Transcriptomics and metabolomics provide insight into the anti-browning mechanism of selenium in freshly cut apples.转录组学和代谢组学为了解硒在鲜切苹果中的抗褐变机制提供了线索。
Front Plant Sci. 2023 May 8;14:1176936. doi: 10.3389/fpls.2023.1176936. eCollection 2023.
9
Integrated transcriptome and metabolome provide insight into flavonoid variation in goji berries (Lycium barbarum L.) from different areas in China.整合转录组和代谢组研究揭示中国不同产地枸杞(Lycium barbarum L.)中类黄酮的变化。
Plant Physiol Biochem. 2023 Jun;199:107722. doi: 10.1016/j.plaphy.2023.107722. Epub 2023 Apr 25.
10
Transcriptomic and metabolomic analysis reveals a protein module involved in preharvest apple peel browning.转录组学和代谢组学分析揭示了一个参与采前苹果果皮褐变的蛋白质模块。
Plant Physiol. 2023 Jul 3;192(3):2102-2122. doi: 10.1093/plphys/kiad064.