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黄瓜过氧化物酶()基因家族的分子特征。

Molecular Characterization of Peroxidase () Gene Family in Cucumber.

机构信息

School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang 453003, China.

Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang 453003, China.

出版信息

Genes (Basel). 2024 Sep 25;15(10):1245. doi: 10.3390/genes15101245.

Abstract

: The Peroxidase () gene family is essential for plant growth and significantly contributes to defense against stresses. However, information about genes in cucumber ( L.) remains limited. : In this present study, genes were identified and characterized using bioinformatics analysis. The expression pattern analysis of genes were examined utilizing the RNA-seq data of cucumber from public databases and real-time quantitative PCR (qRT-PCR) analysis. : Here, we identified 60 genes and mapped them onto seven chromosomes of cucumber. The CsPRX proteins exhibited the presence of 10 conserved motifs, with motif 8, motif 2, motif 5, and motif 3 consistently appearing across all 60 CsPRX protein sequences, indicating the conservation of CsPRX proteins. Furthermore, RNA-seq analysis revealed that differential expression of genes in various tissues. Notably, a majority of the genes exhibited significantly higher expression levels in the root compared to the other plant tissues, suggesting a potential specialization of these genes in root function. In addition, qRT-PCR analysis for four selected genes under different stress conditions indicated that these selected genes demonstrated diverse expression levels when subjected to NaCl, CdCl, and PEG treatments, and the gene was significantly induced by NaCl, CdCl, and PEG stresses, suggesting a vital role of the gene in response to environmental stresses. : These findings will contribute valuable insights for future research into the functions and regulatory mechanisms associated with genes in cucumber.

摘要

过氧化物酶()基因家族对植物生长至关重要,并显著有助于抵御胁迫。然而,关于黄瓜(L.)基因的信息仍然有限。

在本研究中,我们使用生物信息学分析鉴定和表征了基因。利用公共数据库中黄瓜的 RNA-seq 数据和实时定量 PCR(qRT-PCR)分析,研究了基因的表达模式。

在这里,我们鉴定了 60 个基因,并将它们映射到黄瓜的 7 条染色体上。CsPRX 蛋白存在 10 个保守基序, motif 8、motif 2、motif 5 和 motif 3 一致出现在所有 60 个 CsPRX 蛋白序列中,表明 CsPRX 蛋白的保守性。此外,RNA-seq 分析显示,基因在不同组织中的表达存在差异。值得注意的是,大多数基因在根中的表达水平明显高于其他植物组织,这表明这些基因在根功能中可能具有特异性。此外,对四种选定基因在不同胁迫条件下的 qRT-PCR 分析表明,这些选定基因在 NaCl、CdCl 和 PEG 处理下表现出不同的表达水平,而基因在 NaCl、CdCl 和 PEG 胁迫下显著诱导,表明该基因在应对环境胁迫方面起着重要作用。

这些发现将为未来研究黄瓜基因的功能和调控机制提供有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47c2/11507654/bb42bc4fef27/genes-15-01245-g001.jpg

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