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利用DNA多态性分析和统计工具评估苜蓿的遗传多样性

Assessment of Genetic Diversity in Alfalfa Using DNA Polymorphism Analysis and Statistical Tools.

作者信息

Petolescu Cerasela, Sarac Ioan, Popescu Sorina, Tenche-Constantinescu Alina-Maria, Petrescu Irina, Camen Dorin, Turc Alina, Fora George Ciprian, Turcus Violeta, Horablaga Nicolae Marinel, Gorinoiu Gabriela, Mariana Ganea, Onisan Emilian

机构信息

Faculty of Engineering and Applied Technologies, University of Life Sciences "King Mihai I" from Timisoara, 119 Calea Aradului Street, 300645 Timisoara, Romania.

Faculty of Medicine, "Vasile Goldis" Western University of Arad, 310045 Arad, Romania.

出版信息

Plants (Basel). 2024 Oct 11;13(20):2853. doi: 10.3390/plants13202853.

DOI:10.3390/plants13202853
PMID:39458800
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11511019/
Abstract

The cultivation of alfalfa is crucial for farmers as it is an excellent forage crop with a high nitrogen-fixing capacity, making it indispensable in crop rotations. Breeding programs face challenges in advancing more rapidly in genetic diversity to achieve a higher heterosis effect and, consequently, greater yield. In this study, we used 30 alfalfa varieties, which were used for molecular analyses by 5 ISSR primers and 13 RAPD primers. The results obtained highlighted the greater efficiency of ISSR primers in identifying genetic diversity. On the other hand, the simultaneous use of ISSR + RAPD allowed for clearer clustering of varieties that enabled more efficiently distinguishing the genetic diversity. The most efficient ISSR primer, A17, generated 31 polymorphic bands, while the most efficient RAPD primer, L-07, generated only 21 bands. Varieties such as "Pastoral" and "F1413-02" exhibited low similarity coefficients (0.39), suggesting their potential for enhancing genetic variability through crossbreeding, thereby increasing the potential of achieving a greater heterosis effect. Conversely, varieties with high similarity coefficients, such as "Cristal" and "Viking" (0.81) are less suited for this purpose. The correlation between specific markers highlights that using both ISSR and RAPD markers together offers a clear understanding of genetic diversity in alfalfa, aiding in more effective selection for crossbreeding in breeding programs.

摘要

苜蓿种植对农民至关重要,因为它是一种优良的饲料作物,固氮能力强,在作物轮作中不可或缺。育种计划在更快推进遗传多样性以实现更高杂种优势效应从而提高产量方面面临挑战。在本研究中,我们使用了30个苜蓿品种,用5个ISSR引物和13个RAPD引物对其进行分子分析。所得结果突出了ISSR引物在鉴定遗传多样性方面更高的效率。另一方面,同时使用ISSR + RAPD能使品种聚类更清晰,从而更有效地区分遗传多样性。最有效的ISSR引物A17产生了31条多态性条带,而最有效的RAPD引物L - 07仅产生了21条。“田园”和“F1413 - 02”等品种表现出较低的相似系数(0.39),表明它们通过杂交提高遗传变异性的潜力,从而增加实现更大杂种优势效应的可能性。相反,相似系数高的品种,如“水晶”和“维京”(0.81)则不太适合此目的。特定标记之间的相关性表明,同时使用ISSR和RAPD标记能清楚了解苜蓿的遗传多样性,有助于在育种计划中更有效地选择杂交品种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/8554ba146ee7/plants-13-02853-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/b3d5ac9975de/plants-13-02853-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/570160c3509a/plants-13-02853-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/deb20f34a687/plants-13-02853-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/a116489f589e/plants-13-02853-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/f30c56d810ca/plants-13-02853-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/d8911aeef700/plants-13-02853-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/8554ba146ee7/plants-13-02853-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/b3d5ac9975de/plants-13-02853-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/570160c3509a/plants-13-02853-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/deb20f34a687/plants-13-02853-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/a116489f589e/plants-13-02853-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/f30c56d810ca/plants-13-02853-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/d8911aeef700/plants-13-02853-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/151d/11511019/8554ba146ee7/plants-13-02853-g007.jpg

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本文引用的文献

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Plants (Basel). 2024 Mar 26;13(7):953. doi: 10.3390/plants13070953.
2
Effects of SNP marker density and training population size on prediction accuracy in alfalfa (Medicago sativa L.) genomic selection.SNP 标记密度和训练群体大小对紫花苜蓿(Medicago sativa L.)基因组选择预测准确性的影响。
Plant Genome. 2024 Mar;17(1):e20431. doi: 10.1002/tpg2.20431. Epub 2024 Jan 23.
3
Genome-wide genotyping data renew knowledge on genetic diversity of a worldwide alfalfa collection and give insights on genetic control of phenology traits.
全基因组基因分型数据更新了对全球苜蓿种质资源遗传多样性的认识,并为物候性状的遗传控制提供了见解。
Front Plant Sci. 2023 Jul 5;14:1196134. doi: 10.3389/fpls.2023.1196134. eCollection 2023.
4
Alfalfa, Cabbage, Beet and Fennel Microgreens in Floating Hydroponics-Perspective Nutritious Food?漂浮水培法种植的苜蓿、卷心菜、甜菜和茴香微型蔬菜——是有营养的食物吗?
Plants (Basel). 2023 May 25;12(11):2098. doi: 10.3390/plants12112098.
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Plants (Basel). 2023 Apr 10;12(8):1608. doi: 10.3390/plants12081608.
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