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自身 DNA 影响特定代谢产物的生成:来自 LC-MS 和化学计量学研究的证据。

Self-DNA in Affects the Production of Specific Metabolites: Evidence from LC-MS and Chemometric Studies.

机构信息

Dipartimento di Agraria, Università di Napoli Federico II, Via Università 100, Portici, 80055 Naples, Italy.

Institute of Biosciences and BioResources, National Research Council, Via Pietro Castellino 111, 80131 Napoli, Italy.

出版信息

Molecules. 2024 Oct 19;29(20):4947. doi: 10.3390/molecules29204947.

DOI:10.3390/molecules29204947
PMID:39459315
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11510302/
Abstract

The worm , with its short lifecycle and well-known genetic and metabolic pathways, stands as an exemplary model organism for biological research. Its simplicity and genetic tractability make it an ideal system for investigating the effects of different conditions on its metabolism. The chemical analysis of this nematode was performed to identify specific metabolites produced by the worms when fed with either self- or nonself-DNA. A standard diet with OP50 feeding was used as a control. Different development stages were sampled, and their chemical composition was assessed by liquid chromatography-mass spectrometry combined with chemometrics, including both principal component analysis and orthogonal partial least squares discriminant analysis tools. The obtained data demonstrated that self-DNA-treated larvae, when arrested in their cycle, showed significant decreases in dynorphin, an appetite regulator of the nematode, and in N-formyl glycine, a known longevity promoter in . Moreover, a substantial decrease was also recorded in the self-DNA-fed adults for the FMRF amide neuropeptide, an embryogenesis regulator, and for a dopamine derivative modulating nematode locomotion. In conclusion, this study allowed for the identification of key metabolites affected by the self-DNA diet, providing interesting hints on the main molecular pathways involved in its biological inhibitory effects.

摘要

该虫生命周期短,遗传和代谢途径明确,是生物学研究的典范模式生物。其简单性和遗传可操作性使其成为研究不同条件对其代谢影响的理想系统。对这种线虫进行了化学分析,以鉴定用自身或非自身 DNA 喂养时产生的特定代谢物。使用含 OP50 喂养的标准饮食作为对照。采集了不同的发育阶段,并通过液相色谱-质谱联用和化学计量学进行了化学成分评估,包括主成分分析和正交偏最小二乘判别分析工具。获得的数据表明,在自身 DNA 处理的幼虫中,当它们的周期被阻止时,食欲调节剂 dynorphin 和已知的长寿促进剂 N-甲酰甘氨酸显著减少。此外,在自身 DNA 喂养的成虫中,也记录到了神经肽 FMRFamide 的显著减少,该神经肽调节胚胎发生,以及调节线虫运动的多巴胺衍生物。总之,本研究鉴定了受自身 DNA 饮食影响的关键代谢物,为其生物抑制作用涉及的主要分子途径提供了有趣的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/614dd21e9546/molecules-29-04947-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/838377ec95e8/molecules-29-04947-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/b61a983f49e6/molecules-29-04947-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/6fe80b5da987/molecules-29-04947-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/c7eb1277136c/molecules-29-04947-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/705d6998e655/molecules-29-04947-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/5452bd45dffb/molecules-29-04947-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/681636e9a541/molecules-29-04947-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/631724ea6db4/molecules-29-04947-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/614dd21e9546/molecules-29-04947-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/838377ec95e8/molecules-29-04947-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/b61a983f49e6/molecules-29-04947-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/6fe80b5da987/molecules-29-04947-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/c7eb1277136c/molecules-29-04947-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/705d6998e655/molecules-29-04947-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/5452bd45dffb/molecules-29-04947-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/681636e9a541/molecules-29-04947-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/631724ea6db4/molecules-29-04947-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62a0/11510302/614dd21e9546/molecules-29-04947-g009.jpg

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