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杨树中基因家族的全基因组鉴定及其对非生物胁迫的响应

Genome-Wide Identification of the Gene Family in Poplar and Their Responses to Abiotic Stresses.

作者信息

Li Zihui, Wang Hang, Li Chuanqi, Liu Huimin, Luo Jie

机构信息

College of Horticulture and Forestry Science, Hubei Engineering Technology Research Center for Forestry Information, Huazhong Agricultural University, Wuhan 430070, China.

Research Institute of Non-Timber Forestry, Chinese Academy of Forestry, Zhengzhou 450003, China.

出版信息

Life (Basel). 2024 Sep 27;14(10):1239. doi: 10.3390/life14101239.

Abstract

The () gene family is a plant-specific, oligomeric, filamentous family protein located on the cell membrane, which is important for plant growth and stress responses. In this study, a total of 22 were identified in the genome of . Subcellular localization analysis showed that they were predictively distributed in the cell membrane and nucleus. Only five PtREMs members contain both Remorin_C- and Remorin_N-conserved domains, and most of them only contain the Remorin_C domain. A total of 20 gene duplication pairs were found, all of which belonged to fragment duplication. Molecular evolutionary analysis showed the have undergone purified selection. Lots of -acting elements assigned into categories of plant growth and development, stress response, hormone response and light response were detected in the promoters of . showed distinct gene expression patterns in response to diverse stress conditions where the mRNA levels of , and were induced in most cases. A co-expression network centered by was constructed to uncover the possible functions of in protein modification, microtube-based movement and hormone signaling. The obtained results shed new light on understanding the roles of in coping with environmental stresses in poplar species.

摘要

()基因家族是一种植物特有的、寡聚的、丝状的家族蛋白,位于细胞膜上,对植物生长和应激反应很重要。在本研究中,在()的基因组中总共鉴定出22个()。亚细胞定位分析表明,它们预计分布在细胞膜和细胞核中。只有五个PtREMs成员同时包含Remorin_C和Remorin_N保守结构域,并且它们中的大多数只包含Remorin_C结构域。总共发现了20个基因重复对,它们都属于片段重复。分子进化分析表明()经历了纯化选择。在()的启动子中检测到许多分配到植物生长发育、应激反应、激素反应和光反应类别的顺式作用元件。()在不同应激条件下表现出不同的基因表达模式,在大多数情况下,()、()和()的mRNA水平被诱导。构建了以()为中心的共表达网络,以揭示()在蛋白质修饰、基于微管的运动和激素信号传导中的可能功能。所得结果为理解()在杨树应对环境胁迫中的作用提供了新的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/000f/11509593/81677aaa57e9/life-14-01239-g001.jpg

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