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解析噬菌体 vB_G30_01 的遗传结构:全面的分子分析。

Deciphering the Genetic Architecture of Prophage vB_G30_01: A Comprehensive Molecular Analysis.

机构信息

College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China.

College of Land and Environment, Shenyang Agricultural University, Shenyang 110866, China.

出版信息

Viruses. 2024 Oct 19;16(10):1631. doi: 10.3390/v16101631.

Abstract

The current knowledge of phages is limited, with few genomes sequenced and characterized. In this study, a prophage, vB_G30_01, isolated from G30 was characterized and evaluated for its lysogenic host range. The phage was studied using transmission electron microscopy and a host range. The phage genome was sequenced and characterized in depth, including phylogenetic and taxonomic analyses. The linear dsDNA genome of vB_G30_01 contains 67 predicted open reading frames (ORFs), classifying it within Bronfenbrennervirinae. With a total of 10 ORFs involved in DNA replication-related and transcriptional regulator functions, vB_G30_01 may play a role in the genetics and transcription of a host. Additionally, vB_G30_01 possesses a complete set of genes related to host lysogeny and lysis, implying that vB_G30_01 may influence the survival and adaptation of its host. Furthermore, a comparative genomic analysis reveals that vB_G30_01 shares high genomic similarity with other phages and is relatively closely related to those of and , which, in combination with the cross-infection assay, suggests possible cross-species infection capabilities. This study enhances the understanding of prophages, providing insights into phage-host interactions and potential horizontal gene transfer.

摘要

目前人们对噬菌体的了解有限,只有少数基因组被测序和表征。本研究从 G30 中分离出一种潜伏噬菌体 vB_G30_01,并对其溶原宿主范围进行了表征和评估。该噬菌体通过透射电子显微镜和宿主范围进行了研究。深入研究了噬菌体基因组的测序和表征,包括系统发育和分类学分析。vB_G30_01 的线性 dsDNA 基因组包含 67 个预测的开放阅读框(ORF),将其归类为 Bronfenbrennervirinae 科。总共 10 个 ORF 参与 DNA 复制相关和转录调控功能,vB_G30_01 可能在宿主的遗传学和转录中发挥作用。此外,vB_G30_01 具有一套完整的与宿主溶原和裂解相关的基因,这表明 vB_G30_01 可能影响其宿主的生存和适应。此外,比较基因组分析表明,vB_G30_01 与其他噬菌体具有高度的基因组相似性,与 和 的噬菌体关系较为密切,这与交叉感染实验结果结合表明,其可能具有跨物种感染的能力。本研究增进了对噬菌体的了解,深入了解了噬菌体-宿主相互作用和潜在的水平基因转移。

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