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基因组观测元数据库(GeOMe):一个用于存储与基因样本相关的野外和采样事件元数据的新库。

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.

作者信息

Deck John, Gaither Michelle R, Ewing Rodney, Bird Christopher E, Davies Neil, Meyer Christopher, Riginos Cynthia, Toonen Robert J, Crandall Eric D

机构信息

Berkeley Natural History Museums, University of California, Berkeley, California, United States of America.

Hawaii Institute of Marine Biology, University of Hawaii, Kaneohe, Hawaii, United States of America.

出版信息

PLoS Biol. 2017 Aug 3;15(8):e2002925. doi: 10.1371/journal.pbio.2002925. eCollection 2017 Aug.

Abstract

The Genomic Observatories Metadatabase (GeOMe, http://www.geome-db.org/) is an open access repository for geographic and ecological metadata associated with biosamples and genetic data. Whereas public databases have served as vital repositories for nucleotide sequences, they do not accession all the metadata required for ecological or evolutionary analyses. GeOMe fills this need, providing a user-friendly, web-based interface for both data contributors and data recipients. The interface allows data contributors to create a customized yet standard-compliant spreadsheet that captures the temporal and geospatial context of each biosample. These metadata are then validated and permanently linked to archived genetic data stored in the National Center for Biotechnology Information's (NCBI's) Sequence Read Archive (SRA) via unique persistent identifiers. By linking ecologically and evolutionarily relevant metadata with publicly archived sequence data in a structured manner, GeOMe sets a gold standard for data management in biodiversity science.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5381/5542426/82e601a100f1/pbio.2002925.g001.jpg

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