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新属名,新种名,从深部地下含水层分离得到,原称海洋 A 群、SAR406 或海洋微生物。

gen. nov., sp. nov., isolated from a deep subsurface aquifer and proposal of phyl. nov., formerly called Marine Group A, SAR406 or Marinimicrobia.

机构信息

Research Institute for Geo-Resources and Environment, Geological Survey of Japan (GSJ), National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, 305-8567, Japan.

Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, 237-0061, Japan.

出版信息

Int J Syst Evol Microbiol. 2024 Oct;74(10). doi: 10.1099/ijsem.0.006558.

Abstract

A Gram-negative, obligatory anaerobic, chemoheterotrophic bacterium, designated strain IA91, was isolated from sediments and formation water from deep aquifers in Japan. IA91 derives its peptidoglycan, energy and carbon from exogenous cell wall fragments, namely muropeptides, released from actively reproducing bacteria, and is dependent on other bacteria for cell wall formation, growth and even cell shape: IA91 is irregular rod-shaped but coccoids when muropeptide is absent. IA91 grew in a temperature range of 25-45 °C with optimum growth at 40 °C. IA91 utilized limited substrates, yeast extract, muropeptides and d-lactate. The major end products from yeast extract degradation were acetate, hydrogen and carbon dioxide. Co-cultivation with a hydrogen-scavenging methanogenic archaeon promoted IA91 growth. No anaerobic respiration with nitrate, nitrite, sulphate or Fe(III) was observed. The major cellular fatty acids are C16 : 0, C18 : 1 9, C18 : 0 and C17 : 0. The G+C content of the genomic DNA was 45.6 mol%. Phylogenetic analysis based on 16S rRNA gene and conserved protein sequences involved in replication, transcription and translation indicated that IA91 belonged to the candidate phylum Marine Group A (MG-A, SAR406 or . Marinimicrobia) with no cultivated representatives. Based on the phenotypic and phylogenomic characteristics, a new genus and species, gen. nov., sp. nov., is proposed for IA91 (= JCM 39387 = KCTC 25736). In addition, a new bacterial phylum named phyl. nov. is proposed for the candidate phylum MG-A represented by and fam. nov., ord. nov. and classis nov.

摘要

一株革兰氏阴性、专性厌氧、化能异养细菌,被命名为 IA91 菌株,从日本深部含水层的沉积物和地层水中分离得到。IA91 从活跃繁殖的细菌释放的细胞壁碎片(即肽聚糖)中获得肽聚糖、能量和碳,并且依赖于其他细菌进行细胞壁形成、生长甚至细胞形状:当不存在肽聚糖时,IA91 呈不规则杆状,但呈球菌状。IA91 在 25-45°C 的温度范围内生长,最适生长温度为 40°C。IA91 利用有限的底物,酵母提取物、肽聚糖和 d-乳酸。酵母提取物降解的主要终产物是乙酸、氢气和二氧化碳。与一种氢清除产甲烷古菌共培养促进了 IA91 的生长。未观察到硝酸盐、亚硝酸盐、硫酸盐或 Fe(III)的厌氧呼吸。主要细胞脂肪酸为 C16:0、C18:1 9、C18:0 和 C17:0。基因组 DNA 的 G+C 含量为 45.6mol%。基于 16S rRNA 基因和涉及复制、转录和翻译的保守蛋白序列的系统发育分析表明,IA91 属于候选门海洋群 A(MG-A、SAR406 或 Marinimicrobia),没有培养代表。基于表型和系统基因组学特征,提出了一个新的属和种,即 gen. nov.,sp. nov.,IA91(=JCM 39387=KCTC 25736)。此外,候选门 MG-A 代表的一个新的细菌门,即 phyl. nov.,被提出,以及 fam. nov.,ord. nov. 和 classis nov.。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdfa/11652737/bc1b2842033a/ijsem-74-06558-g001.jpg

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