Paesani Massimiliano, Goetzee Arthur G, Abeln Sanne, Mouhib Halima
Department of Computer Science, Bioinformatics, Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV, Amsterdam, The Netherlands.
Van't Hoff Institute for Molecular Sciences, Universiteit van Amsterdam, Science Park 904, 1090 GD, Amsterdam, The Netherlands.
Chemistry. 2025 Jan 9;31(2):e202403058. doi: 10.1002/chem.202403058. Epub 2024 Dec 4.
Mammalian odorant binding proteins (OBPs) have long been suggested to transport hydrophobic odorant molecules through the aqueous environment of the nasal mucus. While the function of OBPs as odorant transporters is supported by their hydrophobic beta-barrel structure, no rationale has been provided on why and how these proteins facilitate the uptake of odorants from the gas phase. Here, a multi-scale computational approach validated through available high-resolution spectroscopy experiments reveals that the conformational space explored by carvone inside the binding cavity of porcine OBP (pOBP) is much closer to the gas than the aqueous phase, and that pOBP effectively manages to transport odorants by lowering the free energy barrier of odorant uptake. Understanding such perireceptor events is crucial to fully unravel the molecular processes underlying the olfactory sense and move towards the development of protein-based biomimetic sensor units that can serve as artificial noses.
长期以来,人们一直认为哺乳动物的气味结合蛋白(OBP)可通过鼻黏液的水环境运输疏水性气味分子。虽然OBP作为气味转运蛋白的功能得到了其疏水β桶结构的支持,但尚未有人解释这些蛋白质为何以及如何促进从气相中摄取气味分子。在此,通过现有的高分辨率光谱实验验证的多尺度计算方法表明,香芹酮在猪OBP(pOBP)结合腔内探索的构象空间与气相的距离比与水相的距离更近,并且pOBP通过降低气味分子摄取的自由能垒有效地实现了气味分子的运输。了解此类受体周围事件对于全面揭示嗅觉背后的分子过程以及朝着开发可作为人工鼻子的基于蛋白质的仿生传感器单元至关重要。