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用于分析力激活蛋白伸展和相互作用的DNA纳米装置。

DNA nanodevice for analysis of force-activated protein extension and interactions.

作者信息

Zhou Kun, Chung Minhwan, Cheng Jing, Powell John T, Yan Qi, Liu Jun, Xiong Yong, Schwartz Martin A, Lin Chenxiang

机构信息

Department of Cell Biology, Yale School of Medicine, USA.

Nanobiology Institute, Yale University, USA.

出版信息

bioRxiv. 2024 Dec 11:2024.10.25.620262. doi: 10.1101/2024.10.25.620262.

Abstract

Force-induced changes in protein structure and function mediate cellular responses to mechanical stresses. Existing methods to study protein conformation under mechanical force are incompatible with biochemical and structural analysis. Taking advantage of DNA nanotechnology, including the well-defined geometry of DNA origami and programmable mechanics of DNA hairpins, we built a nanodevice to apply controlled forces to proteins. This device was used to study the R1-R2 segment of the talin1 rod domain as a model protein, which comprises two alpha-helical bundles that reversibly unfold under tension to expose binding sites for the cytoskeletal protein vinculin. Electron microscopy confirmed tension-dependent protein extension while biochemical analysis demonstrated enhanced vinculin binding under tension. The device could also be used in pull down assays with cell lysates, which identified filamins as novel tension-dependent talin binders. The DNA nanodevice is thus a valuable addition to the molecular toolbox for studying mechanosensitive proteins.

摘要

力诱导的蛋白质结构和功能变化介导细胞对机械应力的反应。现有的在机械力作用下研究蛋白质构象的方法与生化和结构分析不兼容。利用DNA纳米技术,包括DNA折纸的明确几何形状和DNA发夹的可编程力学特性,我们构建了一种纳米装置,用于对蛋白质施加可控力。该装置被用于研究踝蛋白1杆状结构域的R1-R2片段作为模型蛋白,该片段由两个α-螺旋束组成,在张力作用下可逆地展开以暴露细胞骨架蛋白纽蛋白的结合位点。电子显微镜证实了张力依赖性蛋白质伸展,而生化分析表明在张力作用下纽蛋白结合增强。该装置还可用于细胞裂解物的下拉分析,鉴定细丝蛋白为新型张力依赖性踝蛋白结合蛋白。因此,DNA纳米装置是研究机械敏感蛋白的分子工具箱中的一个有价值的补充。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/007c/11648600/34d4f277cb35/nihpp-2024.10.25.620262v2-f0001.jpg

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