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腺嘌呤、胞嘧啶和鸟嘌呤与石墨烯的电子相互作用探究:一项密度泛函理论研究

Exploring the Electronic Interactions of Adenine, Cytosine, and Guanine with Graphene: A DFT Study.

作者信息

Qasem Jawaher, Lone Baliram

机构信息

Nanomaterials Research Laboratory, Department of Physics, Vinayakrao Patil Mahavidyalaya, Vaijapur, Dist. Sambhajinagar, Maharashtra, 423701, India.

Department of Physics, Taiz University, Taiz, 380015, Yemen.

出版信息

ChemistryOpen. 2025 Jun;14(6):e202400350. doi: 10.1002/open.202400350. Epub 2024 Nov 19.

Abstract

This study has provided new insights into the interaction between graphene and DNA nucleobases (adenine, cytosine, and guanine). It compares how each nucleobase interacts with graphene, examining their selectivity and binding energy. The research also explores how these interactions impact the electronic properties of graphene, showing potential applications in graphene-based biosensors and DNA sequencing technologies. Additionally, the findings suggest potential uses in DNA sensing and the functionalization of graphene for various biomedical applications. This study employs density functional theory (DFT) methods, utilizing the B3LYP functional with the 6-311G basis set, to explore the electronic interactions between DNA nucleobases (adenine, cytosine, and guanine) with pure graphene (Gr). We investigate various properties, including adsorption energy, HOMO-LUMO energy levels, charge transfer mechanisms, dipole moments, energy gaps, and density of states (DOS). Our findings indicate that cytosine interacts most favorably with graphene through its oxygen site (Gr-Cyt-O), exhibiting the strongest adsorption. Additionally, adenine's interaction significantly enhances its electronegativity and chemical potential, particularly at the nitrogen position, while decreasing its electrophilicity. Guanine, characterized by the smallest energy gap, demonstrates the highest conductivity among the nucleobases. These results suggest that graphene possesses advantageous properties as an adsorbent for guanine, highlighting its potential applications in biosensor technology.

摘要

本研究为石墨烯与DNA核碱基(腺嘌呤、胞嘧啶和鸟嘌呤)之间的相互作用提供了新的见解。它比较了每个核碱基与石墨烯的相互作用方式,研究了它们的选择性和结合能。该研究还探讨了这些相互作用如何影响石墨烯的电子性质,展示了其在基于石墨烯的生物传感器和DNA测序技术中的潜在应用。此外,研究结果表明在DNA传感以及石墨烯用于各种生物医学应用的功能化方面具有潜在用途。本研究采用密度泛函理论(DFT)方法,利用B3LYP泛函和6-311G基组,探索DNA核碱基(腺嘌呤、胞嘧啶和鸟嘌呤)与纯石墨烯(Gr)之间的电子相互作用。我们研究了各种性质,包括吸附能、HOMO-LUMO能级、电荷转移机制、偶极矩、能隙和态密度(DOS)。我们的研究结果表明,胞嘧啶通过其氧位点(Gr-Cyt-O)与石墨烯的相互作用最为有利,表现出最强的吸附。此外,腺嘌呤的相互作用显著增强了其电负性和化学势,特别是在氮位置,同时降低了其亲电性。鸟嘌呤的能隙最小,在核碱基中表现出最高的导电性。这些结果表明,石墨烯作为鸟嘌呤的吸附剂具有有利特性,突出了其在生物传感器技术中的潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72f7/12138044/83aab1c2f4e1/OPEN-14-e202400350-g002.jpg

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