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对编码RiPP curacozole的神秘生物合成基因簇的分析揭示了一种苯丙氨酸特异性肽羟化酶。

Analysis of the cryptic biosynthetic gene cluster encoding the RiPP curacozole reveals a phenylalanine-specific peptide hydroxylase.

作者信息

Hollands Samantha, Tasch Julia, Simon David J, Wassouf Dimah, Barber Isobel, Gessner Arne, Bechthold Andreas, Zechel David L

机构信息

Department of Chemistry, Queen's University 90 Bader Lane Kingston Ontario K7L 3N6 Canada

Pharmaceutical Biology and Biotechnology, Institute of Pharmaceutical Sciences, Albert-Ludwigs University Freiburg Germany.

出版信息

Chem Sci. 2024 Nov 5;15(47):19858-19869. doi: 10.1039/d4sc02262a. eCollection 2024 Dec 4.

Abstract

Curacozole is representative of a cyanobactin-like sub-family of ribosomally synthesized and post-translationally modified peptides (RiPPs). The molecule is distinguished by its small macrocyclic structure, a poly-azole sequence that includes a phenyloxazole moiety, and a d--Ile residue. The enzymatic steps required for its formation are not well understood. The predicted biosynthetic gene cluster (BGC) for curacozole in is cryptic, but is shown to be potently activated upon constitutive expression of the -specified Leu-tRNA(UUA) molecule. Heterologous expression and gene deletion studies have defined the minimum BGC as consisting of seven genes, A, D, E, B1, C1, F, and BC. The biosynthetic pathway is highly substrate tolerant, accepting six variants of the precursor peptide CzlA to form new curacozole derivatives. This includes replacing the phenyloxazole moiety of curacozole with indole and -hydroxyphenyloxazole groups by conversion of the corresponding CzlA Phe18Trp and Phe18Tyr variants. experiments with purified enzymes demonstrate that CzlD and CzlBC perform cyclodehydration and dehydrogenation reactions, respectively, to form a single oxazole from Ser 22 of CzlA. The curacozole BGC is flanked by I, a non-essential but conserved gene of unknown function. studies demonstrate CzlI to be a non-heme iron(ii) and 2-oxoglutarate-dependent dioxygenase, catalyzing the hydroxylation of Phe18 on CzlA to form the CzlA Phe18Tyr variant, which is then processed to form the -hydroxyphenyloxazole derivative of curacozole. Overall, this work highlights the amenability of RiPP biosynthesis for engineering the production of new compounds and adds to the repertoire of known RiPP enzymes.

摘要

库拉唑是核糖体合成及翻译后修饰肽(RiPPs)中类似蓝细菌素亚家族的代表。该分子的特点是其小的大环结构、包含苯基恶唑部分的聚唑序列以及一个D-异亮氨酸残基。其形成所需的酶促步骤尚不清楚。库拉唑在[具体物种]中的预测生物合成基因簇(BGC)是隐蔽的,但在特定的亮氨酰-tRNA(UUA)分子组成型表达时被证明能被有效激活。异源表达和基因缺失研究确定最小的BGC由七个基因A、D、E、B1、C1、F和BC组成。生物合成途径对底物具有高度耐受性,接受前体肽CzlA的六种变体以形成新的库拉唑衍生物。这包括通过相应的CzlA Phe18Trp和Phe18Tyr变体将库拉唑的苯基恶唑部分替换为吲哚和对羟基苯基恶唑基团。用纯化酶进行的实验表明,CzlD和CzlBC分别进行环脱水和脱氢反应,从CzlA的Ser 22形成单个恶唑。库拉唑BGC两侧是I,一个功能未知的非必需但保守的基因。[相关]研究表明CzlI是一种非血红素铁(II)和2-氧代戊二酸依赖性双加氧酶,催化CzlA上Phe18的羟基化以形成CzlA Phe18Tyr变体,然后该变体被加工形成库拉唑的对羟基苯基恶唑衍生物。总体而言,这项工作突出了RiPP生物合成对工程化生产新化合物的适应性,并增加了已知RiPP酶的种类。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7ce/11616027/681bd960af37/d4sc02262a-f1.jpg

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