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大豆基因组学研究共同体战略计划:2024 - 2028年愿景

Soybean genomics research community strategic plan: A vision for 2024-2028.

作者信息

Stupar Robert M, Locke Anna M, Allen Doug K, Stacey Minviluz G, Ma Jianxin, Weiss Jackie, Nelson Rex T, Hudson Matthew E, Joshi Trupti, Li Zenglu, Song Qijian, Jedlicka Joseph R, MacIntosh Gustavo C, Grant David, Parrott Wayne A, Clemente Tom E, Stacey Gary, An Yong-Qiang Charles, Aponte-Rivera Jose, Bhattacharyya Madan K, Baxter Ivan, Bilyeu Kristin D, Campbell Jacqueline D, Cannon Steven B, Clough Steven J, Curtin Shaun J, Diers Brian W, Dorrance Anne E, Gillman Jason D, Graef George L, Hancock C Nathan, Hudson Karen A, Hyten David L, Kachroo Aardra, Koebernick Jenny, Libault Marc, Lorenz Aaron J, Mahan Adam L, Massman Jon M, McGinn Michaela, Meksem Khalid, Okamuro Jack K, Pedley Kerry F, Rainey Katy Martin, Scaboo Andrew M, Schmutz Jeremy, Song Bao-Hua, Steinbrenner Adam D, Stewart-Brown Benjamin B, Toth Katalin, Wang Dechun, Weaver Lisa, Zhang Bo, Graham Michelle A, O'Rourke Jamie A

机构信息

Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA.

USDA-ARS Soybean & Nitrogen Fixation Research Unit, Raleigh, North Carolina, USA.

出版信息

Plant Genome. 2024 Dec;17(4):e20516. doi: 10.1002/tpg2.20516. Epub 2024 Nov 21.

DOI:10.1002/tpg2.20516
PMID:39572930
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11628913/
Abstract

This strategic plan summarizes the major accomplishments achieved in the last quinquennial by the soybean [Glycine max (L.) Merr.] genetics and genomics research community and outlines key priorities for the next 5 years (2024-2028). This work is the result of deliberations among over 50 soybean researchers during a 2-day workshop in St Louis, MO, USA, at the end of 2022. The plan is divided into seven traditional areas/disciplines: Breeding, Biotic Interactions, Physiology and Abiotic Stress, Functional Genomics, Biotechnology, Genomic Resources and Datasets, and Computational Resources. One additional section was added, Training the Next Generation of Soybean Researchers, when it was identified as a pressing issue during the workshop. This installment of the soybean genomics strategic plan provides a snapshot of recent progress while looking at future goals that will improve resources and enable innovation among the community of basic and applied soybean researchers. We hope that this work will inform our community and increase support for soybean research.

摘要

本战略计划总结了大豆[Glycine max (L.) Merr.]遗传与基因组学研究界在过去五年中取得的主要成就,并概述了未来五年(2024 - 2028年)的关键优先事项。这项工作是2022年底在美国密苏里州圣路易斯市举行为期两天的研讨会期间,50多位大豆研究人员共同商议的结果。该计划分为七个传统领域/学科:育种、生物相互作用、生理学与非生物胁迫、功能基因组学、生物技术、基因组资源与数据集以及计算资源。在研讨会期间,“培养下一代大豆研究人员”被确定为一个紧迫问题,因此增加了一个章节。这份大豆基因组学战略计划阐述了近期进展,同时展望了未来目标,这些目标将改善资源,并促进基础和应用大豆研究人员群体的创新。我们希望这项工作能为我们的研究群体提供信息,并增加对大豆研究的支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/313d/11628913/3495709f605f/TPG2-17-e20516-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/313d/11628913/a90c6a2eab34/TPG2-17-e20516-g003.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/313d/11628913/a90c6a2eab34/TPG2-17-e20516-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/313d/11628913/cfa73deb722a/TPG2-17-e20516-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/313d/11628913/61b623592d35/TPG2-17-e20516-g002.jpg
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本文引用的文献

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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean.大豆单倍型参考基因组的组装、比较分析和利用。
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Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications.
开发和实施巢式单核苷酸多态性 (SNP) 检测,用于育种和遗传研究应用。
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TWAS facilitates gene-scale trait genetic dissection through gene expression, structural variations, and alternative splicing in soybean.TWAS 通过大豆中的基因表达、结构变异和选择性剪接促进了基因尺度性状的遗传剖析。
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