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高密度聚乙烯箔上微生物生物膜演替的宏转录组学:揭示土壤群落中塑料降解潜力

Metatranscriptomics of microbial biofilm succession on HDPE foil: uncovering plastic-degrading potential in soil communities.

作者信息

MacLean Joana, Bartholomäus Alexander, Blukis Roberts, Liebner Susanne, Wagner Dirk

机构信息

GFZ German Research Centre for Geosciences, Section Geomicrobiology, 14473, Potsdam, Germany.

GFZ German Research Centre for Geosciences, Section Interface Geochemistry, 14473, Potsdam, Germany.

出版信息

Environ Microbiome. 2024 Nov 21;19(1):95. doi: 10.1186/s40793-024-00621-1.

Abstract

BACKGROUND

Although plastic pollution is increasing worldwide, very little is known about the microbial processes that take place once plastic debris is incorporated into the soil matrix. In this study, we conducted the first metatranscriptome analysis of polyethylene (PE)-associated biofilm communities in highly polluted landfill soil and compared their gene expression to that of a forest soil community within a 53-day period.

RESULTS

Our findings indicate that the microbial population present in soil contaminated with plastic debris is predisposed to both inhabit and degrade plastic surfaces. Surprisingly, the microbial community from undisturbed forest soil contained a diverse array of plastic-associated genes (PETase, alkB, etc.), indicating the presence of an enzymatic machinery capable of plastic degradation. Plastic-degrading taxa were upregulated in the early stages of biofilm formation. During the maturation of the biofilm, the alkB1/alkM transcripts, which encode PE-degrading enzymes, and transporters such as fadL, livG, livF, livH, and livM were upregulated, along with transcripts associated with the fatty acid β-oxidation pathway.

CONCLUSIONS

In this study, we address the underlying patterns of gene expression during biofilm development in a PE-associated plastisphere in soil and address the pressing question of whether natural microbial communities have the potential to biodegrade petrochemical-based plastic in the soil environment.

摘要

背景

尽管全球塑料污染日益严重,但对于塑料碎片融入土壤基质后发生的微生物过程却知之甚少。在本研究中,我们对高度污染的垃圾填埋场土壤中与聚乙烯(PE)相关的生物膜群落进行了首次宏转录组分析,并在53天内将其基因表达与森林土壤群落的基因表达进行了比较。

结果

我们的研究结果表明,存在于被塑料碎片污染土壤中的微生物群体易于在塑料表面栖息并降解塑料。令人惊讶的是,未受干扰的森林土壤中的微生物群落包含多种与塑料相关的基因(PETase、alkB等),这表明存在能够降解塑料的酶机制。在生物膜形成的早期阶段,降解塑料的分类群上调。在生物膜成熟过程中,编码PE降解酶的alkB1/alkM转录本以及诸如fadL、livG、livF、livH和livM等转运蛋白上调,同时与脂肪酸β-氧化途径相关的转录本也上调。

结论

在本研究中,我们探讨了土壤中与PE相关的塑料球生物膜发育过程中基因表达的潜在模式,并解决了一个紧迫的问题,即天然微生物群落是否有潜力在土壤环境中生物降解石化基塑料。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a767/11583400/b82f50ae711f/40793_2024_621_Fig1_HTML.jpg

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