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基于全基因组鉴定和转录组分析,对绿豆细胞色素 c 氧化酶编码基因的特性及其对镉胁迫的响应进行研究。

Characterisation of cytochrome c oxidase-coding genes from mung bean and their response to cadmium stress based on genome-wide identification and transcriptome analysis.

机构信息

School of Biological and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou, 730070, P.R. China.

Sinopharm Lanzhou Biopharmaceuticals Co., Ltd, Lanzhou, 730030, P.R. China.

出版信息

Mol Biol Rep. 2024 Nov 26;52(1):17. doi: 10.1007/s11033-024-10102-w.

Abstract

BACKGROUND

Cytochrome c oxidase (COX) is a crucial mitochondrial enzyme in the electron transport chain of plants, implicated in energy production and stress responses. Despite its importance, the function of COX in leguminous plants, especially under heavy metal stress like cadmium (Cd), remains understudied.

METHODS AND RESULTS

In this study, COX genes (COX s) were identified based on the genome annotation file in mung bean (Vigna radiata (Linn.) R. Wilczek), and the gene structure, physicochemical properties and systematic relationships of the relevant amino acid sequences were analyzed by using bioinformatics method. The effects of Cd on the transcription levels and activities of COX in mung bean roots, stems, and leaves were detected to understand the mechanism of COX in mung bean in response to cadmium (Cd) stress. Transcriptome sequencing revealed tissue-specific expression with roots showed the highest levels. Cd stress significantly altered the expression and activity of VrCOXs, particularly in roots and stems, with varied responses among different genes.

CONCLUSIONS

The differential response of VrCOX s to Cd stress indicates a role in the plant stress tolerance mechanism. The study provides insights into the function of COXs in legumes and a foundation for further research into Cd tolerance mechanisms, which could be vital for enhancing legume production and ensuring food safety in contaminated environments.

摘要

背景

细胞色素 c 氧化酶(COX)是植物电子传递链中的一种重要的线粒体酶,与能量产生和应激反应有关。尽管其重要性不言而喻,但 COX 在豆科植物中的功能,尤其是在重金属镉(Cd)等胁迫下的功能,仍有待深入研究。

方法与结果

本研究基于绿豆(Vigna radiata(Linn.)R. Wilczek)的基因组注释文件,鉴定了 COX 基因(COXs),并通过生物信息学方法分析了相关氨基酸序列的基因结构、理化性质和系统关系。检测了 Cd 对绿豆根、茎和叶中 COX 转录水平和活性的影响,以了解 COX 应对 Cd 胁迫的机制。转录组测序结果表明,COX 在组织中呈现出特异性表达,其中根中的表达水平最高。Cd 胁迫显著改变了 VrCOXs 的表达和活性,特别是在根和茎中,不同基因的响应存在差异。

结论

VrCOXs 对 Cd 胁迫的差异响应表明其在植物胁迫耐受机制中发挥作用。本研究为豆科植物 COXs 的功能提供了新的认识,为进一步研究 Cd 耐受机制奠定了基础,这对提高豆科作物产量和确保污染环境下的食品安全至关重要。

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