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估计六种非肿瘤和癌症相互排斥实体中的多基因疾病数量。

Estimating the Number of Polygenic Diseases Among Six Mutually Exclusive Entities of Non-Tumors and Cancer.

机构信息

Department of Laboratory Medicine, Karolinska Institutet, ANA Futura, Alfred Nobels Allé 8 Floor 8, SE-141 52 Huddinge, Sweden.

Karolinska ATMP Center, Karolinska Institutet, Karolinska University Hospital, SE-171 76 Stockholm, Sweden.

出版信息

Int J Mol Sci. 2024 Nov 7;25(22):11968. doi: 10.3390/ijms252211968.

Abstract

In the era of precision medicine with increasing amounts of sequenced cancer and non-cancer genomes of different ancestries, we here enumerate the resulting polygenic disease entities. Based on the cell number status, we first identified six fundamental types of polygenic illnesses, five of which are non-cancerous. Like complex, non-tumor disorders, neoplasms normally carry alterations in multiple genes, including in 'Drivers' and 'Passengers'. However, tumors also lack certain genetic alterations/epigenetic changes, recently named 'Goners', which are toxic for the neoplasm and potentially constitute therapeutic targets. Drivers are considered essential for malignant transformation, whereas environmental influences vary considerably among both types of polygenic diseases. For each form, hyper-rare disorders, defined as affecting <1/10 individuals, likely represent the largest number of disease entities. Loss of tumor-suppressor genes exemplifies such a profoundly rare mutational event. For non-tumor, polygenic diseases, pathway-centered taxonomies seem preferable. This classification is not readily feasible in cancer, but the inclusion of Drivers and possibly also of epigenetic changes to the existing nomenclature might serve as initial steps in this direction. Based on the detailed genetic alterations, the number of polygenic diseases is essentially countless, but different forms of nosologies may be used to restrict the number.

摘要

在精准医学时代,越来越多的不同种族的癌症和非癌症基因组被测序,我们在这里列举了由此产生的多基因疾病实体。基于细胞数量状态,我们首先确定了六种基本类型的多基因疾病,其中五种是非癌症的。与复杂的非肿瘤性疾病一样,肿瘤通常携带多个基因的改变,包括“驱动基因”和“乘客基因”。然而,肿瘤也缺乏某些遗传改变/表观遗传变化,最近被称为“死亡基因”,这些改变对肿瘤有毒,可能构成治疗靶点。驱动基因被认为是恶性转化所必需的,而环境影响在这两种多基因疾病中差异很大。对于每种形式,超罕见疾病(定义为影响 <1/10 的个体)可能代表最大数量的疾病实体。肿瘤抑制基因的缺失就是这样一个极其罕见的突变事件。对于非肿瘤性多基因疾病,以途径为中心的分类似乎更可取。这种分类在癌症中不容易实现,但将驱动基因,可能还有表观遗传变化纳入现有命名法,可能是朝这个方向迈出的初步步骤。基于详细的遗传改变,多基因疾病的数量实际上是无数的,但可以使用不同形式的分类学来限制疾病数量。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1238/11593959/543c0a6e3eca/ijms-25-11968-g001.jpg

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