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物种的重复组分析和卫星 DNA 染色体模式。

Repeatome Analysis and Satellite DNA Chromosome Patterns in Species.

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilov St., 119991 Moscow, Russia.

All-Russian Institute of Medicinal and Aromatic Plants, Federal Agency for Scientific Organizations, 7 Green St., 117216 Moscow, Russia.

出版信息

Int J Mol Sci. 2024 Nov 17;25(22):12340. doi: 10.3390/ijms252212340.

Abstract

The cosmopolitan genus L. (Fabaceae) is divided into sections , , and This genus includes many valuable medicinal, melliferous, and forage species. The species taxonomy and genome relationships within the sections are still unclear. We examined intra- and interspecific diversity in the section (sect.) based on repeatome analyses using NGS data, bioinformatic technologies, and chromosome FISH mapping of 35S rDNA, 5S rDNA, and the identified satellite DNA families (satDNAs). A comparison of repeatomes of , , and revealed differences in their composition. However, similarity in sequences of most satDNAs indicated a close relationship between genomes within sect. . New effective satDNA chromosomal markers were detected, which is important for karyotype analyses within . Intra- and interspecific variability in the chromosomal distribution patterns of the studied markers were revealed, and species karyograms were constructed. These results provided new insight into the karyotype structures and genomic diversity within sect. , clarified the systematic position of and , and confirmed the distant genomic relationships between species from sections and Our findings are important for further comparative genome studies within the genus .

摘要

广布属(豆科)分为 、 和 。该属包含许多有价值的药用、蜜源和饲料植物。各节内的物种分类和基因组关系仍不清楚。我们利用 NGS 数据、生物信息学技术以及 35S rDNA、5S rDNA 和鉴定的卫星 DNA 家族(satDNA)的染色体 FISH 作图,对 进行了种内和种间多样性研究。对 、 和 重复组的比较揭示了它们组成的差异。然而,大多数 satDNA 序列的相似性表明 sect. 内的基因组关系密切。检测到了新的有效的 satDNA 染色体标记,这对于 内的核型分析很重要。揭示了研究标记在染色体分布模式上的种内和种间变异性,并构建了物种核型图。这些结果为 sect. 内的核型结构和基因组多样性提供了新的见解,澄清了 和 的系统位置,并证实了来自 sect. 和 的物种之间的远缘基因组关系。我们的研究结果对属内的进一步比较基因组研究具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/179b/11595117/d6b6cedd3dd3/ijms-25-12340-g001.jpg

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