• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

重复序列分析和卫星 DNA 染色体模式在 、 、 和 （禾本科）。

Repeatome Analyses and Satellite DNA Chromosome Patterns in , , and (Poaceae).

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilov St., 119991 Moscow, Russia.

出版信息

Genes (Basel). 2022 Apr 26;13(5):762. doi: 10.3390/genes13050762.

DOI:10.3390/genes13050762
PMID:35627148
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9141916/
Abstract

Subpolar and polar ecotypes of (Popl.) Roshev, (L.) P. Beauv, and E. Desv. are well adapted to stressful environmental conditions, which make them useful model plants for genetic research and breeding. For the first time, the comparative repeatome analyses of subpolar and polar , , and was performed using RepeatExplorer/TAREAN pipelines and FISH-based chromosomal mapping of the identified satellite DNA families (satDNAs). In the studied species, mobile genetic elements of class 1 made up the majority of their repetitive DNA; interspecific variations in the total amount of Ty3/Gypsy and Ty1/Copia retroelements, DNA transposons, ribosomal, and satellite DNA were revealed; 12-18 high confident and 7-9 low confident putative satDNAs were identified. According to BLAST, most satDNAs demonstrated sequence similarity with satDNAs of and indicating their common origin. Chromosomal mapping of 45S rDNA, 5S rDNA, and satDNAs of allowed us to construct the species karyograms and detect new molecular chromosome markers important for species. Our findings confirmed that genomes of and were more closely related compared to according to repeatome composition and patterns of satDNA chromosomal distribution.

摘要

亚极区和极地生态型的 （Popl.）Roshev，（L.）P. Beauv.和 E. Desv. 对胁迫环境条件具有很好的适应性，使它们成为遗传研究和育种的有用模式植物。首次使用 RepeatExplorer/TAREAN 管道和基于 FISH 的鉴定卫星 DNA 家族（satDNAs）的染色体作图对亚极区和极地 、 、 进行了比较重复组分析。在所研究的物种中，1 类移动遗传元件构成了它们重复 DNA 的大部分；揭示了 Ty3/Gypsy 和 Ty1/Copia 反转录转座子、DNA 转座子、核糖体和卫星 DNA 的总量的种间变异；鉴定了 12-18 个高置信和 7-9 个低置信的假定 satDNAs。根据 BLAST，大多数 satDNAs 与 和 的 satDNAs 具有序列相似性，表明它们具有共同的起源。45S rDNA、5S rDNA 和 satDNAs 的染色体作图使我们能够构建物种核型，并检测到对 物种重要的新分子染色体标记。我们的研究结果证实，根据重复组组成和 satDNA 染色体分布模式，与 相比， 和 的基因组更为密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/a60de5889857/genes-13-00762-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/ec8d827da3d7/genes-13-00762-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/803c195beff3/genes-13-00762-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/84c014b6babe/genes-13-00762-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/bc85e2b8c250/genes-13-00762-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/a60de5889857/genes-13-00762-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/ec8d827da3d7/genes-13-00762-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/803c195beff3/genes-13-00762-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/84c014b6babe/genes-13-00762-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/bc85e2b8c250/genes-13-00762-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bff/9141916/a60de5889857/genes-13-00762-g005.jpg

相似文献

1
Repeatome Analyses and Satellite DNA Chromosome Patterns in , , and (Poaceae).重复序列分析和卫星 DNA 染色体模式在 、 、 和 （禾本科）。
Genes (Basel). 2022 Apr 26;13(5):762. doi: 10.3390/genes13050762.
2
Comparative molecular cytogenetic characterization of seven Deschampsia (Poaceae) species.七种发草属（禾本科）植物的比较分子细胞遗传学特征
PLoS One. 2017 Apr 13;12(4):e0175760. doi: 10.1371/journal.pone.0175760. eCollection 2017.
3
Integration of Repeatomic and Cytogenetic Data on Satellite DNA for the Genome Analysis in the Genus (Lamiaceae).唇形科卫星DNA重复组学与细胞遗传学数据整合用于基因组分析
Plants (Basel). 2022 Aug 29;11(17):2244. doi: 10.3390/plants11172244.
4
Molecular Cytogenetic Analysis of Deschampsia antarctica Desv. (Poaceae), Maritime Antarctic.南极发草（禾本科）的分子细胞遗传学分析，南极海洋地区。
PLoS One. 2015 Sep 22;10(9):e0138878. doi: 10.1371/journal.pone.0138878. eCollection 2015.
5
Integration of Genomic and Cytogenetic Data on Tandem DNAs for Analyzing the Genome Diversity Within the Genus L. (Fabaceae).整合串联DNA的基因组和细胞遗传学数据以分析羽扇豆属（豆科）内的基因组多样性。
Front Plant Sci. 2022 Apr 29;13:865958. doi: 10.3389/fpls.2022.865958. eCollection 2022.
6
Cytogenomics of P. Beauv. (Poaceae) Species Based on Sequence Analyses and FISH Mapping of CON/COM Satellite DNA Families.基于CON/COM卫星DNA家族序列分析和荧光原位杂交定位的黍属（禾本科）物种细胞基因组学
Plants (Basel). 2021 May 30;10(6):1105. doi: 10.3390/plants10061105.
7
Chromosomal Differentiation of (Poaceae) Based on Four Satellite DNA Families.基于四个卫星DNA家族的（禾本科）染色体分化
Front Genet. 2021 Sep 21;12:728664. doi: 10.3389/fgene.2021.728664. eCollection 2021.
8
Molecular cytogenetics of valuable Arctic and sub-Arctic pasture grass species from the Aveneae/Poeae tribe complex (Poaceae).有价值的北极和亚北极草原物种的分子细胞遗传学来自燕麦族/画眉草族复合群（禾本科）。
BMC Genet. 2019 Dec 4;20(1):92. doi: 10.1186/s12863-019-0792-2.
9
A morphological and molecular study in the Deschampsia cespitosa complex (Poaceae; Poeae; Airinae) in northern North America.北美北部的苔草复合体（禾本科；早熟禾族；鼠茅亚族）的形态学和分子研究
Am J Bot. 2011 Aug;98(8):1366-80. doi: 10.3732/ajb.1000495.
10
Low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: citogenomic characterization of transposable elements and satellite DNA.利用低覆盖度测序分析西番莲属（Passiflora edulis Sims）重复 DNA：转座元件和卫星 DNA 的细胞遗传特征分析。
BMC Genomics. 2019 Apr 2;20(1):262. doi: 10.1186/s12864-019-5576-6.

引用本文的文献

1
The first insight into Acanthocephalus (Palaeacanthocephala) satellitome: species-specific satellites as potential cytogenetic markers.对棘头虫纲（古棘头虫亚纲）卫星基因组的初步认识：物种特异性卫星作为潜在的细胞遗传学标记。
Sci Rep. 2025 Jan 23;15(1):2945. doi: 10.1038/s41598-025-85728-2.
2
Genetic Diversity of the Species of the Genus P.Beauv. (Poaceae) Based on the Analysis of the ITS Region: Polymorphism Proves Distant Hybridization.基于 ITS 区分析的 P.Beauv. 属（禾本科）种间遗传多样性：多态性证明存在远缘杂交。
Int J Mol Sci. 2024 Oct 22;25(21):11348. doi: 10.3390/ijms252111348.
3
Editorial for the Special Issue "Satellite DNA Genomics".

本文引用的文献

1
Chromosomal Differentiation of (Poaceae) Based on Four Satellite DNA Families.基于四个卫星DNA家族的（禾本科）染色体分化
Front Genet. 2021 Sep 21;12:728664. doi: 10.3389/fgene.2021.728664. eCollection 2021.
2
The nature of intraspecific and interspecific genome size variation in taxonomically complex eyebrights.在分类复杂的眼子菜中，种内和种间基因组大小变化的性质。
Ann Bot. 2021 Sep 7;128(5):639-651. doi: 10.1093/aob/mcab102.
3
Cytogenomics of P. Beauv. (Poaceae) Species Based on Sequence Analyses and FISH Mapping of CON/COM Satellite DNA Families.
专刊编辑寄语：卫星 DNA 基因组学
Genes (Basel). 2024 Sep 18;15(9):1223. doi: 10.3390/genes15091223.
4
Genome Variability in Artificial Allopolyploid Hybrids of L. and Balansa ex Coss. et Durieu Based on Marker Sequences of Satellite DNA and the ITS1-5.8S rDNA Region.基于卫星 DNA 标记序列和 ITS1-5.8S rDNA 区的人工异源多倍体杂种 L. 和 Balansa ex Coss. et Durieu 的基因组变异。
Int J Mol Sci. 2024 May 19;25(10):5534. doi: 10.3390/ijms25105534.
5
Karyotype Description and Comparative Chromosomal Mapping of 5S rDNA in 42 Species.核型描述和 5S rDNA 在 42 个物种中的比较染色体定位。
Genes (Basel). 2024 May 20;15(5):647. doi: 10.3390/genes15050647.
6
Genome Studies in Four Species of L. (Asteraceae) Using Satellite DNAs as Chromosome Markers.利用卫星DNA作为染色体标记对菊科莴苣属四个物种进行基因组研究
Plants (Basel). 2023 Dec 2;12(23):4056. doi: 10.3390/plants12234056.
7
Satellite DNAs-From Localized to Highly Dispersed Genome Components.卫星 DNA-从局域化到高度分散的基因组成分。
Genes (Basel). 2023 Mar 17;14(3):742. doi: 10.3390/genes14030742.
8
Integration of Repeatomic and Cytogenetic Data on Satellite DNA for the Genome Analysis in the Genus (Lamiaceae).唇形科卫星DNA重复组学与细胞遗传学数据整合用于基因组分析
Plants (Basel). 2022 Aug 29;11(17):2244. doi: 10.3390/plants11172244.
9
A Pipeline NanoTRF as a New Tool for Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes.一种管道式纳米TRF作为在植物基因组原始纳米孔测序读数中鉴定卫星DNA的新工具。
Plants (Basel). 2022 Aug 12;11(16):2103. doi: 10.3390/plants11162103.
基于CON/COM卫星DNA家族序列分析和荧光原位杂交定位的黍属（禾本科）物种细胞基因组学
Plants (Basel). 2021 May 30;10(6):1105. doi: 10.3390/plants10061105.
4
Which factors contribute most to genome size variation within angiosperms?哪些因素对被子植物基因组大小的变异贡献最大？
Ecol Evol. 2021 Jan 31;11(6):2660-2668. doi: 10.1002/ece3.7222. eCollection 2021 Mar.
5
Retrotransposon-based genetic diversity of Desv. from King George Island (Maritime Antarctic).乔治王岛（南极海洋地区）德氏藻基于反转录转座子的遗传多样性。
Ecol Evol. 2020 Dec 16;11(1):648-663. doi: 10.1002/ece3.7095. eCollection 2021 Jan.
6
Identification and characterization of satellite DNAs in Poa L.早熟禾属植物中卫星DNA的鉴定与特征分析
Mol Cytogenet. 2020 Nov 16;13(1):47. doi: 10.1186/s13039-020-00518-x.
7
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2.使用 RepeatExplorer2 从未组装的序列读取中进行重复 DNA 的全局分析。
Nat Protoc. 2020 Nov;15(11):3745-3776. doi: 10.1038/s41596-020-0400-y. Epub 2020 Oct 23.
8
Comparative analyses of DNA repeats and identification of a novel Fesreba centromeric element in fescues and ryegrasses.比较分析 DNA 重复序列和鉴定羊茅属和黑麦草属中的新型 Fesreba 着丝粒元件。
BMC Plant Biol. 2020 Jun 17;20(1):280. doi: 10.1186/s12870-020-02495-0.
9
Differential Genome Size and Repetitive DNA Evolution in Diploid Species of sect. (Asteraceae).菊科某组二倍体物种的基因组大小差异与重复DNA进化
Front Plant Sci. 2020 Mar 31;11:362. doi: 10.3389/fpls.2020.00362. eCollection 2020.
10
Molecular cytogenetics of valuable Arctic and sub-Arctic pasture grass species from the Aveneae/Poeae tribe complex (Poaceae).有价值的北极和亚北极草原物种的分子细胞遗传学来自燕麦族/画眉草族复合群（禾本科）。
BMC Genet. 2019 Dec 4;20(1):92. doi: 10.1186/s12863-019-0792-2.