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在理论和实验中将空间药物异质性与微生物生长动力学联系起来。

Linking spatial drug heterogeneity to microbial growth dynamics in theory and experiment.

作者信息

Hu Zhijian, Wu Yuzhen, Freire Tomas, Gjini Erida, Wood Kevin

机构信息

Department of Biophysics, University of Michigan, Ann Arbor, USA.

Department of Mathematics, University of Michigan, Ann Arbor, USA.

出版信息

bioRxiv. 2024 Nov 28:2024.11.21.624783. doi: 10.1101/2024.11.21.624783.

Abstract

Diffusion and migration play pivotal roles in microbial communities - shaping, for example, colonization in new environments and the maintenance of spatial structures of biodiversity. While previous research has extensively studied free diffusion, such as range expansion, there remains a gap in understanding the effects of biologically or physically deleterious confined environments. In this study, we examine the interplay between migration and spatial drug heterogeneity within an experimental meta-community of . , a Gram-positive opportunistic pathogen. When the community is confined to spatially-extended habitats ('islands') bordered by deleterious conditions, we find that the population level response depends on the trade-off between the growth rate within the island and the rate of transfer into regions with harsher conditions, a phenomenon we explore by modulating antibiotic concentration within the island. In heterogeneous islands, composed of spatially patterned patches that support varying levels of growth, the population's fate depends critically on the specific spatial arrangement of these patches - the same spatially averaged growth rate leads to diverging responses. These results are qualitatively captured by simple simulations, and analytical expressions which we derive using first-order perturbation approximations to reaction-diffusion models with explicit spatial dependence. Among all possible spatial arrangements, our theoretical and experimental findings reveal that the arrangement with the highest growth rates at the center most effectively mitigates population decline, while the arrangement with the lowest growth rates at the center is the least effective. Extending this approach to more complex experimental communities with varied spatial structures, such as a ring-structured community, further validates the impact of spatial drug arrangement. Our findings suggest new approaches to interpreting diverging clinical outcomes when applying identical drug doses and inform the possible optimization of spatially-explicit dosing strategies.

摘要

扩散和迁移在微生物群落中起着关键作用,例如影响新环境中的定殖以及生物多样性空间结构的维持。虽然先前的研究广泛探讨了自由扩散,如范围扩展,但在理解生物或物理有害的受限环境的影响方面仍存在差距。在本研究中,我们在以革兰氏阳性机会致病菌[具体菌种未给出]为对象的实验性元群落中,研究了迁移与空间药物异质性之间的相互作用。当群落被限制在由有害条件界定的空间扩展栖息地(“岛屿”)中时,我们发现种群水平的反应取决于岛屿内的生长速率与转移到条件更恶劣区域的速率之间的权衡,我们通过调节岛屿内的抗生素浓度来探究这一现象。在由支持不同生长水平的空间模式斑块组成的异质岛屿中,种群的命运关键取决于这些斑块的具体空间排列——相同的空间平均生长速率会导致不同的反应。这些结果通过简单模拟以及我们使用具有明确空间依赖性的反应扩散模型的一阶微扰近似推导得出的解析表达式进行了定性描述。在所有可能的空间排列中,我们的理论和实验结果表明,中心生长速率最高的排列最有效地减轻了种群数量下降,而中心生长速率最低的排列效果最差。将这种方法扩展到具有不同空间结构的更复杂实验群落,如环形结构群落,进一步验证了空间药物排列的影响。我们的研究结果为解释相同药物剂量应用时不同的临床结果提供了新方法,并为空间明确给药策略的可能优化提供了参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80dd/11611311/4482745d07c7/nihpp-2024.11.21.624783v2-f0001.jpg

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