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针对二氢乳清酸脱氢酶(DHODH)的新型小分子的虚拟筛选和分子动力学研究:潜在抑制剂的鉴定

Virtual screening and molecular dynamics studies of novel small molecules targeting DHODH: identification of potential inhibitors.

作者信息

Ja'afaru Saudatu Chinade, Uzairu Adamu, Mishra Vipin Kumar, Sallau Muhammed Sani, Ibrahim Muhammad Tukur, Dubey Amit

机构信息

Department of Chemistry, Ahmadu Bello University Zaria, Zaria, Nigeria.

Department of Chemistry, Aliko Dangote University of Science and Technology, Wudil, , Kano Nigeria.

出版信息

In Silico Pharmacol. 2024 Nov 27;12(2):113. doi: 10.1007/s40203-024-00281-6. eCollection 2024.

Abstract

UNLABELLED

Schistosomiasis affects more than 200 million individuals globally, mainly in underprivileged areas, leading to long-term health issues and adding to socio-economic challenges. The existing reliance on a solitary medication (Praziquantel) gives rise to concerns about drug resistance and possible side effects. The exploration of alternative treatments is crucial to meet the demand for more efficient, safer, and cost-effective remedies, guaranteeing continuous control and eradication initiatives while reducing the risk of drug resistance. To address these issues, we employed a structure-based drug design approach, generating eighteen innovative inhibitors targeting Dihydroorotate dehydrogenase (SmDHODH). A robust QSAR model yielded promising statistical parameters, and molecular docking of 31 known inhibitors lead to the identification of a lead candidate (Compound ) with favorable binding efficacy. Eighteen novel compounds were designed, showing improved binding affinities compared to both the lead compound and the standard drug, Praziquantel (PZQ). Molecular dynamics simulations and Density Functional Theory (DFT) affirmed the reactivity and stability of protein-ligand complexes under physiological conditions. These compounds exhibit strong inhibition of SmDHODH and meet drug-likeness criteria. Additionally, they demonstrate favorable pharmacokinetic properties, suggesting their potential effectiveness in treating schistosomiasis. Our study underscores the importance of understanding molecular properties for optimizing treatments against this neglected tropical disease.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40203-024-00281-6.

摘要

未标注

血吸虫病在全球影响超过2亿人,主要集中在贫困地区,导致长期健康问题,并加剧社会经济挑战。目前对单一药物(吡喹酮)的依赖引发了对耐药性和可能的副作用的担忧。探索替代治疗方法对于满足对更高效、更安全和更具成本效益的治疗方法的需求至关重要,以确保持续的控制和根除措施,同时降低耐药风险。为了解决这些问题,我们采用了基于结构的药物设计方法,生成了18种针对二氢乳清酸脱氢酶(SmDHODH)的新型抑制剂。一个强大的定量构效关系(QSAR)模型产生了有前景的统计参数,对31种已知抑制剂的分子对接导致鉴定出一种具有良好结合效力的先导候选物(化合物)。设计了18种新型化合物,与先导化合物和标准药物吡喹酮(PZQ)相比,它们显示出更高的结合亲和力。分子动力学模拟和密度泛函理论(DFT)证实了蛋白质-配体复合物在生理条件下的反应性和稳定性。这些化合物对SmDHODH表现出强烈的抑制作用,并符合类药标准。此外,它们还表现出良好的药代动力学性质,表明它们在治疗血吸虫病方面具有潜在疗效。我们的研究强调了了解分子性质对于优化针对这种被忽视的热带病的治疗方法的重要性。

补充信息

在线版本包含可在10.1007/s40203-024-00281-6获取的补充材料。

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