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结合多轴注意力和条件生成对抗网络的肝脏肿瘤分割方法

Liver tumor segmentation method combining multi-axis attention and conditional generative adversarial networks.

作者信息

Liao Jiahao, Wang Hongyuan, Gu Hanjie, Cai Yinghui

机构信息

School of Computing and Artificial Intelligence, Changzhou University, Changzhou, China.

College of Information Science and Technology, Zhejiang Shuren University, Hangzhou, China.

出版信息

PLoS One. 2024 Dec 3;19(12):e0312105. doi: 10.1371/journal.pone.0312105. eCollection 2024.

Abstract

In modern medical imaging-assisted therapies, manual annotation is commonly employed for liver and tumor segmentation in abdominal CT images. However, this approach suffers from low efficiency and poor accuracy. With the development of deep learning, automatic liver tumor segmentation algorithms based on neural networks have emerged, for the improvement of the work efficiency. However, existing liver tumor segmentation algorithms still have several limitations: (1) they often encounter the common issue of class imbalance in liver tumor segmentation tasks, where the tumor region is significantly smaller than the normal tissue region, causing models to predict more negative samples and neglect the tumor region; (2) they fail to adequately consider feature fusion between global contexts, leading to the loss of crucial information; (3) they exhibit weak perception of local details such as fuzzy boundaries, irregular shapes, and small lesions, thereby failing to capture important features. To address these issues, we propose a Multi-Axis Attention Conditional Generative Adversarial Network, referred to as MA-cGAN. Firstly, we propose the Multi-Axis attention mechanism (MA) that projects three-dimensional CT images along different axes to extract two-dimensional features. The features from different axes are then fused by using learnable factors to capture key information from different directions. Secondly, the MA is incorporated into a U-shaped segmentation network as the generator to enhance its ability to extract detailed features. Thirdly, a conditional generative adversarial network is built by combining a discriminator and a generator to enhance the stability and accuracy of the generator's segmentation results. The MA-cGAN was trained and tested on the LiTS public dataset for the liver and tumor segmentation challenge. Experimental results show that MA-cGAN improves the Dice coefficient, Hausdorff distance, average surface distance, and other metrics compared to the state-of-the-art segmentation models. The segmented liver and tumor models have clear edges, fewer false positive regions, and are closer to the true labels, which plays an active role in medical adjuvant therapy. The source code with our proposed model are available at https://github.com/jhliao0525/MA-cGAN.git.

摘要

在现代医学影像辅助治疗中,手动标注常用于腹部CT图像中的肝脏和肿瘤分割。然而,这种方法效率低下且准确性差。随着深度学习的发展,基于神经网络的自动肝脏肿瘤分割算法应运而生,以提高工作效率。然而,现有的肝脏肿瘤分割算法仍存在几个局限性:(1)它们在肝脏肿瘤分割任务中经常遇到类不平衡的常见问题,即肿瘤区域明显小于正常组织区域,导致模型预测更多的负样本而忽略肿瘤区域;(2)它们没有充分考虑全局上下文之间的特征融合,导致关键信息丢失;(3)它们对局部细节(如模糊边界、不规则形状和小病变)的感知较弱,从而无法捕捉重要特征。为了解决这些问题,我们提出了一种多轴注意力条件生成对抗网络,称为MA-cGAN。首先,我们提出了多轴注意力机制(MA),它沿不同轴投影三维CT图像以提取二维特征。然后,通过使用可学习因子融合来自不同轴的特征,以从不同方向捕捉关键信息。其次,将MA作为生成器并入U形分割网络,以增强其提取详细特征的能力。第三,通过结合判别器和生成器构建条件生成对抗网络,以提高生成器分割结果的稳定性和准确性。MA-cGAN在LiTS公共数据集上进行了肝脏和肿瘤分割挑战的训练和测试。实验结果表明,与最先进的分割模型相比,MA-cGAN提高了Dice系数、豪斯多夫距离、平均表面距离等指标。分割后的肝脏和肿瘤模型边缘清晰,假阳性区域较少,并且更接近真实标签,这在医学辅助治疗中发挥了积极作用。我们提出的模型的源代码可在https://github.com/jhliao0525/MA-cGAN.git获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73a0/11614272/0ae765dd36d1/pone.0312105.g001.jpg

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